蛋白质氧化损伤的微观分析:碳化对维林头部结构,动力学和聚合能力的影响
Drazen Petrov1, Bojan Zagrovic
1Department of Structural and Computational Biology, Max F. Perutz Laboratories, University of Vienna, Campus Vienna Biocenter 5, Vienna AT-1030, Austria.
Journal of the American Chemical Society
|April 22, 2011
概括
蛋白质碳化,一种氧化修饰,随着年龄和疾病的增加而增加. 高水平可能会破坏蛋白质结构的稳定,而修改氨酸/氨酸残留物会增强蛋白质聚合,影响与年龄相关的疾病.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 生物物理学的生物物理.
背景情况:
- 蛋白质碳基化是一种关键的不可逆转的氧化修饰,与衰老和神经退行和癌症等疾病有关.
- 碳化对蛋白质结构,动力学和聚合的原子级影响仍然基本未知.
研究的目的:
- 研究蛋白质碳化对维林头部区域结构,动力学和聚合倾向的影响.
- 探索特定氨基酸残留物 (lysine, arginine, proline) 的碳化如何影响蛋白质的稳定性和聚合.
主要方法:
- 经典的分子动力学模拟被用来研究原生和碳化膜头部领域.
- 详尽的模拟涵盖了碳化氨酸,氨酸和氨酸残留物的所有组合.
- 热力学整合和分子水性潜力方法被用于量化效应.
主要成果:
- 需要高水平的碳化来显著破坏稳定性,并通过破坏稳定元素来展开蛋白质结构.
- 氨酸和氨酸残留物的碳化相当于疏水性突变,增加了内在聚合倾向.
- 这种增加的聚合倾向适用于原生和未折叠的蛋白质状态.
结论:
- 蛋白质碳化对结构和动态的影响是复杂的,需要高水平的修改才能显著地破坏稳定.
- 碳化从根本上增加了蛋白质聚合的倾向,有助于与年龄有关的病理.
- 这些发现支持一种新的实验策略,使用局部定向突变发生来研究碳化效应.
相关概念视频
Protein and Protein Structure
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme can...
A protein's shape is critical to its function. For example, an enzyme can...
Protein Denaturation
The function of proteins depends on their native three-dimensional structure, which is dictated by the amino acid sequence of the specific protein. Folding of the polypeptide chain takes place under specific conditions that energetically favor the folded conformation. In contrast, protein denaturation occurs spontaneously under unfavorable conditions that disrupt the integrity of the folded conformation. Thus, the chemical and physical environment of a protein, such as significant changes in pH...
Covalently Linked Protein Regulators
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein.
These groups modify specific amino acids in a protein.
Protein Organization
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence.
The primary structure of a protein is its amino acid sequence.
Protein Folding
Overview
Amyloid Fibrils
Amyloid fibrils are aggregates of misfolded proteins. Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils.
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining, normally used to...
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining, normally used to...


