新生链折叠的自由能量在跨位孔中
James Gumbart1, Christophe Chipot, Klaus Schulten
1Department of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
Journal of the American Chemical Society
|April 29, 2011
概括
在合成过程中,Sec转位子通道有助于新生的蛋白质折叠. 它的特性有利于α螺旋形成,表明其作用不仅仅是蛋白质插入膜.
科学领域:
- 分子生物学分子生物学
- 生物物理学的生物物理.
- 蛋白质折叠 蛋白质的折叠
背景情况:
- 新生的蛋白质开始在核糖体出口道内折叠.
- 许多蛋白质,包括膜蛋白,在合成过程中通过Sec转位子.
- 转位子促进蛋白质插入到脂质双层.
研究的目的:
- 研究Sec转位子对新生的链蛋白折叠的影响.
- 为了确定转位子环境是否会影响蛋白质的二次结构形成.
主要方法:
- 计算了对α螺旋形成的平均力潜力.
- 在转位通道内模拟了一个10-alanine寡.
- 作为位的函数,分析了形状状态 (α-螺旋和延伸) .
主要成果:
- 转位子中占主导地位的形状状态与水中的形状状态 (alpha-helical 和 extended) 相似.
- 转位环境将平衡转移到阿尔法螺旋状态.
- 跨位面的表面特性和可变的直径影响折叠平衡.
结论:
- 这种Sec转位子有助于新生的蛋白质折叠,而不仅仅是插入.
- 转位子的特性在新兴的多链中积极促进α螺旋体的形成.
- 这表明转位子在蛋白质生物发生过程中具有双重作用.
相关概念视频
Protein Translocation Machinery on the ER Membrane
The translocon complex situated on the ER membrane is the main gateway for the protein secretory pathway. It facilitates the transport of nascent peptides into the ER lumen and their insertion into the ER membrane.
Sec61 protein conducting channel
In eukaryotes, the translocon complex comprises a core heterotrimeric translocator channel called the Sec61 complex. This channel includes three transmembrane proteins, Sec61α, Sec61β, and Sec61γ, and is the largest subunit of the translocon complex.
Sec61 protein conducting channel
In eukaryotes, the translocon complex comprises a core heterotrimeric translocator channel called the Sec61 complex. This channel includes three transmembrane proteins, Sec61α, Sec61β, and Sec61γ, and is the largest subunit of the translocon complex.
Cotranslational Protein Translocation
Translocation of proteins across membranes is an ancient process that occurs even in bacteria and archaebacteria. In fact, the components of the translocation machinery are still conserved between prokaryotes and eukaryotes.
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
Sec61 channel partners for cotranslational translocation
During cotranslational translocation, the Sec61 channel partners with the signal recognition particle (SRP), the signal recognition particle receptor (SR), and the ribosomes to transport the nascent polypeptide chain...
Protein Folding Quality Check in the RER
ER is the primary site for the maturation and folding of soluble and transmembrane secretory proteins. The calnexin cycle is a specific chaperone system that folds and assesses the confirmation of N-glycosylated proteins before they can exit the ER lumen. The primary players of this quality check pipeline are the lectins, ER-resident chaperones, and a glucosyl transferase enzyme. In case the calnexin system in the lumen fails to salvage a misfolded protein, it is transported to the cytoplasm...
Post-translational Translocation of Proteins to the RER
A sizable fraction of proteins destined for ER are first synthesized in the cell cytosol and then transported across the ER membrane–a process called post-translational translocation. Similar to cotranslationally translocated proteins, these proteins also use the Sec translocon complex to enter the ER lumen.
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
Targeting proteins to the ER
Hsp40 and Hsp70 chaperone molecules bind the translated proteins in the cytosol to prevent their folding. The chaperone binding helps to keep the signal...
Molecular Chaperones and Protein Folding
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
Molecular Chaperones and Protein Folding
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...


