灵长类CpG群岛是由异质的进化制度维持的,涉及到最小的选择
Netta Mendelson Cohen1, Ephraim Kenigsberg, Amos Tanay
1Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot 76100, Israel.
Cell
|May 31, 2011
概括
关键的表观基因组元素CpG群岛是由不同的进化过程形成的,如低DNA甲基化和偏差基因转换,而不是选择高CpG含量. 了解这些起源对健康和疾病的DNA甲基化研究产生了影响.
科学领域:
- 基因组学就是基因组学.
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 进化生物学 进化生物学
背景情况:
- CpG岛屿是基因组区域,其特点是DNA甲基化低.
- 目前的定义仅依赖于基因组序列组成.
- 了解它们的进化起源对于表观基因组研究至关重要.
研究的目的:
- 研究产生和维持哺乳动物CpG岛屿的进化过程.
- 在CpG岛屿形成中区分选择和其他进化力量.
主要方法:
- 进化模型的发展.
- 基因组序列的分析.
- 人口遗传学数据的整合.
主要成果:
- 确定了形成CpG岛屿的独特进化制度.
- 证明低DNA甲基化和偏差基因转换是关键驱动因素.
- 没有发现有意义的证据表明选择有利于高CpG含量在差异甲基化地区.
结论:
- CpG 群岛是由异质的,非选择性的进化力量引起的.
- 这些发现对了解健康和疾病中的DNA甲基化模式具有重大意义.
相关概念视频
Multi-species Conserved Sequences
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Types of Selection
Natural selection influences the frequencies of particular alleles and phenotypes within populations in several different ways. Primarily, natural selection can be directional, stabilizing, or disruptive. Directional selection favors one extreme trait and shifts the population towards that phenotype while selecting against individuals displaying alternate traits. Stabilizing selection favors an intermediate trait with a narrow range of variation. Deviation from the optimal phenotype towards an...
Gene Evolution - Fast or Slow?
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
Gene Evolution - Fast or Slow?
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...


