ONIOM ((DFT:MM) 对2-基乙酸二氧化原酶的研究:什么决定了不同基质的命运?
1Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore. hirao@ntu.edu.sg
Journal of the American Chemical Society
|August 31, 2011
概括
由于不同的反应路径,酶从相似的基质中产生不同的产物. 质子合电子转移 (PCET) 决定了在这些酶反应中形成常见基中间体后的结果.
科学领域:
- 生物化学 生物化学
- 酶学 是一种酶学.
- 计算化学计算化学
背景情况:
- 酶催化各种反应,但了解微妙的基质差异如何导致各种产品至关重要.
- 2-乙基酸二氧化酶 (HEPD) 催化了与2-乙基酸 (2-HEP) 和1-HEP的不同反应,产生了不同的产物.
研究的目的:
- 阐明HEPD与2-HEP和1-HEP的不同反应机制.
- 确定区分酶途径和产品形成的关键因素.
主要方法:
- 利用ONIOM ((DFT:MM) 的计算方法来建模和分析酶反应.
- 研究了分子层面的反应机制,重点关注中间体形成和电子转移过程.
主要成果:
- 确定了两种基质通过相同的初始过程生成的类似的基质中间体.
- 揭示了质子合电子转移 (PCET) 在1-HEP反应中是活跃的,但不是在2-HEP反应中.
- 证明在激素中间体形成后的2-HEP反应中采用了替代途径.
结论:
- 质子合电子转移 (PCET) 在决定HEPD的反应路径和产品特异性的关键作用.
- 基质相互作用的微妙差异导致共同基因中间生成后不同的机械命运.
相关概念视频
Hydroboration-Oxidation of Alkenes
In addition to the oxymercuration–demercuration method, which converts the alkenes to alcohols with Markovnikov orientation, a complementary hydroboration-oxidation method yields the anti-Markovnikov product. The hydroboration reaction, discovered in 1959 by H.C. Brown, involves the addition of a B–H bond of borane to an alkene giving an organoborane intermediate. The oxidation of this intermediate with basic hydrogen peroxide forms an alcohol.
Regioselectivity and Stereochemistry of Hydroboration
A significant aspect of hydroboration–oxidation is the regio- and stereochemical outcome of the reaction.
Hydroboration proceeds in a concerted fashion with the attack of borane on the π bond, giving a cyclic four-centered transition state. The –BH2 group is bonded to the less substituted carbon and –H to the more substituted carbon. The concerted nature requires the simultaneous addition of –H and –BH2 across the same face of the alkene giving syn stereochemistry.
Hydroboration proceeds in a concerted fashion with the attack of borane on the π bond, giving a cyclic four-centered transition state. The –BH2 group is bonded to the less substituted carbon and –H to the more substituted carbon. The concerted nature requires the simultaneous addition of –H and –BH2 across the same face of the alkene giving syn stereochemistry.
Regioselective Formation of Enolates
As depicted in the figure below, the unsymmetrical ketones can form two possible enolates: less substituted or more substituted enolates. Usually, the thermodynamic enolates are formed from the more substituted α-carbon atom, while the kinetic enolates are formed faster by deprotonation from the less substituted position. The thermodynamic enolates have lower energy, so they are more stable. But the energy required to form kinetic enolates is less.
Oxidation of Alkenes: Syn Dihydroxylation with Osmium Tetraoxide
Alkenes are converted to 1,2-diols or glycols through a process called dihydroxylation. It involves the addition of two hydroxyl groups across the double bond with two different stereochemical approaches, namely anti and syn. Dihydroxylation using osmium tetroxide progresses with syn stereochemistry.
Regioselectivity and Stereochemistry of Acid-Catalyzed Hydration
The rate of acid-catalyzed hydration of alkenes depends on the alkene's structure, as the presence of alkyl substituents at the double bond can significantly influence the rate.
Oxidation of Alkenes: Anti Dihydroxylation with Peroxy Acids
Diols are compounds with two hydroxyl groups. In addition to syn dihydroxylation, diols can also be synthesized through the process of anti dihydroxylation. The process involves treating an alkene with a peroxycarboxylic acid to form an epoxide. Epoxides are highly strained three-membered rings with oxygen and two carbons occupying the corners of an equilateral triangle. This step is followed by ring-opening of the epoxide in the presence of an aqueous acid to give a trans diol.


