小鼠基因组变异及其对表型及其基因调节的影响
Thomas M Keane1, Leo Goodstadt, Petr Danecek
1The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1HH, UK.
Nature
|September 17, 2011
概括
研究人员测序了17种近亲生小鼠菌株,发现了10倍多的遗传变异. 这项研究促进了对小鼠基因组学,基因表达和特征变异的理解,为未来的功能研究铺平了道路.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
背景情况:
- 实验室老鼠是生物医学研究中至关重要的模型生物.
- 之前对同胞生育小鼠菌株的基因组数据有限,阻碍了全面的遗传分析.
研究的目的:
- 为了生成17种内生小鼠菌株的高质量基因组序列.
- 为了确定这些菌株内的综合性遗传变异组.
- 探索遗传变异对基因表达和特征遗传的功能影响.
主要方法:
- 17种内生小鼠菌株的全基因组测序.
- 变体调用和注释. 变体调用和注释.
- 对等位基特异性表达和定量特征位点 (QTL) 的分析.
主要成果:
- 与以前的研究相比,发现了近10倍多的遗传变异.
- 发现至少12%的转录表现出组织特异性表达偏差.
- 718 QTL的功能变异的表征,显示分子性质和相对于基因效应大小的位置的变化.
结论:
- 生成的基因组序列为小鼠研究社区提供了宝贵的资源.
- 这些数据使我们能够更深入地了解小鼠的基因型-表型关系.
- 这项工作在这个关键模型生物体中启动了功能基因组学的新阶段.
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