鉴定了67种基因组标记和基因组 lysine crotonylation,作为一种新型的基因组修饰方法
Minjia Tan1, Hao Luo, Sangkyu Lee
1Ben May Department of Cancer Research, The University of Chicago, Chicago, IL 60637, USA.
Cell
|September 20, 2011
概括
研究人员发现了67种新的组织蛋白修饰,使已知的标记扩大了70%. 氨酸化 (Kcr) 是一种在活性促进剂和增强剂上发现的保存标记,特别是在男性生殖细胞的性别染色体上.
科学领域:
- 表观遗传学和分子生物学
- 基因组学就是基因组学.
- 蛋白质组学是指蛋白质组学.
背景情况:
- 基因组转化后修饰 (PTMs) 是基因表达的关键调节者.
- 已知的基因组PTM的库存正在不断扩大,揭示了新的调节机制.
- 了解新的基因组标记是解读复杂表观遗传景观的关键.
研究的目的:
- 为了识别和表征新的组织蛋白修饰.
- 调查氨酸克罗托尼化 (Kcr) 的功能和基因组定位.
- 探索Kcr在基因调节中的作用,特别是在男性生殖细胞中.
主要方法:
- 高通量选用于新型组织蛋白修饰.
- 基于质谱的蛋白质组学用于识别和验证PTM.
- 在人体和小鼠雄性生殖细胞中进行基因组和表观基因组分析.
主要成果:
- 鉴定了67种新的组织蛋白修饰,已知的标记增加了70%.
- 证实了氨酸克罗托尼化 (Kcr) 作为一种进化保守的组合素 PTM.
- 基因组Kcr标记了人类和小鼠基因组中的活性促进剂和增强剂.
- 丰富Kcr的性染色体和丸特异性基因在后代性雄性生殖细胞,包括逃脱X链基因.
结论:
- 这项研究显著扩大了已知的基因组PTMs的范围.
- 希斯Kcr代表了一种独特的PTM,在机理和功能上与氨酸乙化不同.
- Kcr是男性胚胎细胞中活跃的性染色体相关基因的特定标记.
相关概念视频
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Spreading of Chromatin Modifications
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer is an enzyme that can...
Writers
The writer is an enzyme that can...
Histone Variants at the Centromere
Histone variants are the histone proteins with structural and sequence variations. These variants may be regarded as “mutant” forms that replace their canonical histone counterparts in the nucleosomes. Specific post-translational modifications on the histone variants enable further chromatin complexity and regulate tissue-specific gene expression. The most common histone variants are from histone H2A, H2B, and linker histone H1 families. However, several variants of histone H3 variants are also...
The Nucleosome Core Particle
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their primary aim is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. On the other hand, they must allow polymerase enzymes to access histone-bound DNA during...
The Nucleosome Core Particle
Nucleosomes are the DNA-histone complex, where the DNA strand is wound around the histone core. The histone core is an octamer containing two copies of H2A, H2B, H3, and H4 histone proteins.
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...
The paradox
Nucleosomes, paradoxically, perform two opposite functions simultaneously. On the one hand, their main responsibility is to protect the delicate DNA strands from physical damage and help achieve a higher compaction ratio. While on the other hand, they must allow polymerase enzymes to access DNA...


