相关实验视频
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Modeling an Enzyme Active Site using Molecular Visualization Freeware
Published on: December 25, 2021
一个活性位点的关氨酸在其质子化状态下参与glmS ribozyme催化
Júlia Viladoms1, Lincoln G Scott, Martha J Fedor
1Department of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States.
Journal of the American Chemical Society
|September 23, 2011
概括
这项研究研究了关氨酸33 (G33) 在glmS ribozyme中的催化作用. 结果表明G33在RNA裂变中充当过渡状态稳定剂,而不是一般基质催化剂.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 在RNA催化过程中,RNA催化
背景情况:
- ribozymes 中的活性位点 guanines 是被提议的一般基因催化剂.
- 在Bacillus anthracis glmS ribozyme中G33的特定作用尚不清楚.
研究的目的:
- 为了研究G33在glmS ribozyme中的催化机制.
- 为了确定G33是否作为一般基催化剂或在RNA分裂中发挥其他作用.
主要方法:
- 动力测试测量野生型和突变glmS ribozymes的裂变的pH依赖性.
- 基于光的pK测量,使用在33位的8-azaguanosine进行测量.
主要成果:
- 来自动力学试验的明显pK (a) 值不支持G33作为一般基质催化剂.
- 在pK (a) 值中的差异表明G33脱不是pH依赖的步骤.
- G33(N1) 可能通过中性,质子化形式的键稳定了过渡状态.
结论:
- glmS ribozyme 中的 G33 不能作为一个一般的基质催化剂.
- G33可能通过键稳定了催化过渡状态.
- 为G33提出了一个替代的催化模型.
相关概念视频
GTPases and their Regulation
Guanine nucleotide-binding proteins (G-proteins), also known as GTPases, are a superfamily of proteins that regulate many cellular processes, such as cell signaling, vesicular transport, and the regulation of cell shape and motility. Mutation or dysfunction of these proteins can lead to disease. There are around 40,000 known G-proteins that can broadly be classified into two groups ‒ small G-proteins consisting of a single domain and large multi-domain G-proteins.
Large G-proteins, also known...
Large G-proteins, also known...
GTPases and their Regulation
Guanine nucleotide-binding proteins (G-proteins), also known as GTPases, are a superfamily of proteins that regulate many cellular processes, such as cell signaling, vesicular transport, and the regulation of cell shape and motility. Mutation or dysfunction of these proteins can lead to disease. There are around 40,000 known G-proteins that can broadly be classified into two groups ‒ small G-proteins consisting of a single domain and large multi-domain G-proteins.
Large G-proteins, also known...
Large G-proteins, also known...
Activation and Inactivation of G Proteins
Heterotrimeric G proteins are guanine nucleotide-binding proteins. As the name suggests, heterotrimeric G proteins are composed of three subunits: alpha, beta, and gamma. They remain GDP-bound or GTP-bound inside the cells and switch between inactive/active states. The Gα subunit possesses the nucleotide-binding pocket that binds guanine nucleotides and switches between GDP or GTP-bound states. In contrast, the Gꞵ and Gγ subunits are always bound together with high affinity and are together...
Small GTPases - Ras and Rho
Ras and Rho are small monomeric GTPases that act downstream of receptor tyrosine kinase (RTK) and regulate various cellular processes. These GTPases switch between active and inactive states by binding to guanine nucleotides.
Three regulatory proteins control their activity:
Three regulatory proteins control their activity:
Rab Proteins
Rab proteins constitute the largest family of monomeric GTPases, of which 70 members are present in humans. Rab proteins and their effectors regulate consecutive stages of vesicle transport such as vesicle transport, docking, and fusion to the correct recipient membrane.
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
Rab proteins switch between a cytosolic, GDP-bound inactive state and a membrane-anchored, GTP-bound active state. By themselves, Rabs show slow rates of GDP/GTP exchange and GTP hydrolysis. Thus, Rab proteins are considered...
Enzymes
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...

