屏蔽键作为结合动学的结构决定因素:在药物设计中的应用
Peter Schmidtke1, F Javier Luque, James B Murray
1Departament de Fisicoquímica, Facultat de Farmàcia, Universitat de Barcelona, Av. Joan XXIII s/n, 08028 Barcelona, Spain.
Journal of the American Chemical Society
|October 11, 2011
概括
水屏蔽的键涉及埋藏的极性原子,减缓分子相互作用. 这一发现为预测药物标结合动力学和基于结构动力学关系优化药物设计提供了一种新方法.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 药理学 药理学是指药理学的学科.
背景情况:
- 控制分子相互作用时间尺度在生物化学中至关重要.
- 了解结构动力学关系对于药物设计至关重要,特别是为了优化药物向复杂生命周期.
- 目前关于调控分子识别动力学的结构因素的知识有限.
研究的目的:
- 研究结构特征在调控分子识别动力学中的作用.
- 建立蛋白质结合位结构和分子相互作用的速率之间的联系.
- 开发一种用于药物发现中的结构动力学关系的预测工具.
主要方法:
- 在蛋白质结合点中被埋藏的极性原子所形成的防水键的分析.
- 研究与这些键的形成和断裂相关的能量惩罚.
- 分子模拟与实验热力学和动力学数据对Hsp90抑制剂的比较.
主要成果:
- 几乎被埋藏的极性原子通常会形成由水屏蔽的键.
- 这些防水债表表现出较慢的汇率,由于能量处罚过渡状态.
- 通过简单的结构分析,可以预测水屏蔽键的存在.
- 对Hsp90抑制剂的实验数据验证了这些键作为动力陷的作用.
结论:
- 水屏蔽的键作为动力陷,影响分子相互作用速率.
- 埋藏的极性原子的结构分析可以预测和解释结构动力学关系.
- 这一发现为基于结构的药物发现和优化药物标结合寿命提供了一种新的方法.
相关概念视频
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