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通过细菌RNA聚合酶 σ子单元识别促进体-10元素的结构基础
Andrey Feklistov1, Seth A Darst
1The Rockefeller University, 1230 York Avenue, New York, NY 10065, USA. afeklistov@rockefeller.edu
Cell
|December 6, 2011
概括
细菌RNA聚合酶sigma子单元识别了-10促进元,驱动DNA开放. 晶体结构揭示了与A(-11) 和T(-7) 基的关键相互作用,解释了转录启动.
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 生物化学 生物化学
背景情况:
- 细菌转录启动对于基因调节至关重要.
- RNA聚合酶西格玛子单元与-10促进体元素的结合对于促进体开放至关重要.
- 了解这种相互作用的结构基础是破译转录调节的关键.
研究的目的:
- 为了确定西格玛子单元域2的晶体结构,与-10促进子DNA结合.
- 阐明驱动促进子开放和转录启动的分子相互作用.
主要方法:
- 进行X射线晶体学以获得高分辨率结构.
- 生物化学测试以验证结构发现.
主要成果:
- 晶体结构揭示了西格玛域2和DNA骨干之间的广泛相互作用.
- 确定了与A(-11) 和T(-7) 的特定基相互作用,这些基被翻转出来并埋在蛋白质口袋中.
- 提出了一个模型,在这个模型中,西格玛对-10个元素的识别直接驱动着促进器的开放.
结论:
- 该研究提供了细菌促进剂化的详细结构机制.
- A(-11) 和 T(-7) 在序列识别和DNA挤出中发挥着关键作用.
- 这些发现为在启动过程中转录泡的形成提供了重要的见解.
相关概念视频
The Eukaryotic Promoter Region
The eukaryotic promoter region is a segment of DNA located upstream of a gene. It contains an RNA polymerase binding site, a transcription start site, and several cis-regulatory sequences. The proximal promoter region is located in the vicinity of the gene and has cis-regulatory sequences and the core promoter. The core promoter is the binding site for RNA polymerase and is usually located between -35 and +35 nucleotides from the transcription start site. The distal promoter regions are...
The Eukaryotic Promoter Region
The eukaryotic promoter region is a segment of DNA located upstream of a gene. It contains an RNA polymerase binding site, a transcription start site, and several cis-regulatory sequences. The proximal promoter region is located in the vicinity of the gene and has cis-regulatory sequences and the core promoter. The core promoter is the binding site for RNA polymerase and is usually located between -35 and +35 nucleotides from the transcription start site. The distal promoter regions are...
Bacterial RNA Polymerase
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Bacterial RNA Polymerase
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
Bacterial Transcription
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription Initiation
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...

