单分子mRNA衰变测量揭示了酵母酵母中促进器调节的mRNA稳定性
Tatjana Trcek1, Daniel R Larson, Alberto Moldón
1Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Cell
|December 27, 2011
概括
使者RNA (mRNA) 衰变通常在细胞群中进行研究. 这项研究使用单细胞方法揭示细胞周期调节的mRNA稳定性开关,揭示了促进体依赖的衰变机制.
科学领域:
- 分子生物学分子生物学
- 细胞生物学 细胞生物学
- 遗传学 是一个遗传学.
背景情况:
- 传统的mRNA衰变测量使用细胞种群,限制了对复杂,短期调节机制的洞察力.
- 了解mRNA降解动态对于细胞过程至关重要,包括细胞周期的进展.
研究的目的:
- 为了研究单个酵母细胞中细胞周期调节的mRNA衰变.
- 确定控制mRNA稳定性和降解时间的机制.
主要方法:
- 采用单分子光在现场混合 (smFISH) 来测量单个酵母细胞中的mRNA衰变.
- 在细胞周期期间分析了SWI5和CLB2转录的稳定性.
主要成果:
- 确定了SWI5和CLB2转录的依赖于线粒分裂的mRNA稳定性切换器.
- 证明mRNA衰变时间和特异性是由基因的促进子调节的,而不是cis作用序列.
- 表明Dbf2p与SWI5和CLB2mRNA结合转录,调节它们的衰变.
结论:
- 揭示了一种新的促进体依赖mRNA稳定性控制机制.
- 这种调节策略,通过促进体控制mRNA衰变,可以在各种mRNA和生物体中保持.
- 这些发现为细胞周期期间的转录后基因调节提供了新的见解.
更多相关视频
07:03Determining Genome-wide Transcript Decay Rates in Proliferating and Quiescent Human Fibroblasts
Published on: January 2, 2018
09:21Saccharomyces cerevisiae Metabolic Labeling with 4-thiouracil and the Quantification of Newly Synthesized mRNA As a Proxy for RNA Polymerase II Activity
Published on: October 22, 2018
相关概念视频
RNA Stability
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
RNA Stability
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
mRNA Stability and Gene Expression
The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
Cis-acting Elements involved in mRNA stability
mRNA Stability and Gene Expression
The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
Cis-acting Elements involved in mRNA stability
Nuclear Export of mRNA
Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
Nonsense-mediated mRNA Decay
The Upf proteins that carry out nonsense-mediated decay (NMD) are found in all eukaryotic organisms, including humans. Each protein has an individual role, but they need to work in collaboration. Upf1 is an ATP-dependent RNA helicase that unwinds the RNA helix. Because Upf1 can unwind any RNA, Upf2 and Upf3 are required to help Upf1 discriminate between nonsense and normal mRNAs.
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
Usually, Upf3 binds to an Exon Junction Complex (EJC) at mRNA splice sites. If a ribosome fully translates the mRNA,...
