疏水性核心灵活性调节HIV-1蛋白酶中的酶活性
Seema Mittal1, Yufeng Cai, Madhavi N L Nalam
1Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, USA.
Journal of the American Chemical Society
|February 3, 2012
概括
改变人类免疫缺陷病毒1型 (HIV-1) 蛋白酶疏水核的灵活性显著影响其活性. 这一发现支持突变如何通过调节酶功能的方式影响耐药性.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 病毒学 病毒学
背景情况:
- 人类免疫缺陷病毒1型 (HIV-1) 蛋白酶对于病毒成熟至关重要.
- 疏水性核心重组对于蛋白酶活性和药物耐药性至关重要.
- 蛋白酶的灵活性可能在酶功能中发挥关键作用.
研究的目的:
- 研究灵活性在HIV-1蛋白酶活性中的作用.
- 为了确定改变灵活性是否会影响酶功能和耐药性.
主要方法:
- 在HIV-1蛋白酶的柔性区域中设计了二硫化键.
- 使用晶体结构,化和质谱学证实了二硫化键的形成.
- 在氧化和还原状态下评估酶活性,并进行分子动力学模拟.
主要成果:
- 双硫化物交叉链接大大降低了蛋白酶活性.
- 在减少二硫化物键时,酶活性恢复.
- 模拟显示了由工程化二硫化物键传播的改变动态.
结论:
- 疏水性核心的灵活性变化调节了HIV-1蛋白酶活性.
- 远程突变可能通过改变酶灵活性和活性平衡来赋予耐药性.
相关概念视频
Membrane Fluidity
Membrane fluidity is explained by the fluid mosaic model of the cell membrane, which describes the plasma membrane structure as a mosaic of components—including phospholipids, cholesterol, proteins, and carbohydrates—that gives the membrane a fluid character.
Mosaic nature of the membrane
The mosaic characteristic of the membrane helps the plasma membrane remain fluid. The integral proteins and lipids exist as separate but loosely-attached molecules in the membrane. The membrane is a relatively...
Mosaic nature of the membrane
The mosaic characteristic of the membrane helps the plasma membrane remain fluid. The integral proteins and lipids exist as separate but loosely-attached molecules in the membrane. The membrane is a relatively...
Membrane Fluidity
Cell membranes are composed of phospholipids, proteins, and carbohydrates loosely attached to one another through chemical interactions. Molecules are generally able to move about in the plane of the membrane, giving the membrane its flexible nature called fluidity. Two other features of the membrane contribute to membrane fluidity: the chemical structure of the phospholipids and the presence of cholesterol in the membrane.
Induced-fit Model
Most chemical reactions in cells require enzymes—biological catalysts that speed up the reaction without being consumed or permanently changed. They reduce the activation energy needed to convert the reactants into products. Enzymes are proteins, that usually work by binding to a substrate—a reactant molecule that they act upon.
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical characteristics of...
Enzymes exhibit substrate specificity, meaning that they can only bind to certain substrates. This is mainly determined by the shape and chemical characteristics of...
Protein-Protein Interfaces
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a polypeptide...
Protein-protein Interfaces
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a polypeptide...
Protein Denaturation
The function of proteins depends on their native three-dimensional structure, which is dictated by the amino acid sequence of the specific protein. Folding of the polypeptide chain takes place under specific conditions that energetically favor the folded conformation. In contrast, protein denaturation occurs spontaneously under unfavorable conditions that disrupt the integrity of the folded conformation. Thus, the chemical and physical environment of a protein, such as significant changes in pH...


