对人类蛋白质编码基因中功能丧失变异的系统调查
Daniel G MacArthur1, Suganthi Balasubramanian, Adam Frankish
1Wellcome Trust Sanger Institute, Hinxton, UK. macarthur@atgu.mgh.harvard.edu
人类基因组通常包含大约100个功能丧失 (LoF) 变异,使大约20个基因失活. 这项研究完善了LoF变体的流行情况,并确定了临床应用的与疾病相关的等位基因.
科学领域:
- 基因组学就是基因组学.
- 人类遗传学 人类遗传学
- 生物信息学是一种生物信息学.
背景情况:
- 基因组测序揭示了许多遗传变异.
- 预计许多变异会导致蛋白质编码基因的功能丧失 (LoF).
- 这表明人类基因组内存在显著的冗余性.
研究的目的:
- 准确确定人类基因组中LoF变异的流行率和特征.
- 识别罕见和常见的LoF等位基因,包括与严重疾病相关的等位基因.
- 开发一种在临床测序中优先考虑候选基因的方法.
主要方法:
- 将严格的过器应用于来自 185 个人类基因组的 2951 个假定 LoF 变体.
- 分析LoF耐受性和衰退性疾病基因之间的功能和进化差异.
主要成果:
- 人类基因组通常含有大约100个真正的LoF变体,大约有20个基因完全失活.
- 确定了罕见的LoF等位基因,包括26个已知的和21个预测的严重致病变体.
- 在非基本基因中表征常见的LoF变异.
结论:
- 提供了对人类基因组中LoF变体负担的精细估计.
- 强调了LoF变异的临床相关性,包括与疾病相关的等位基因.
- 提供了一种新的方法,以帮助解释临床测序数据.
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