对mRNA甲基化的全面分析显示,3' UTRs和接近停止的编码子的丰富
Kate D Meyer1, Yogesh Saletore, Paul Zumbo
1Department of Pharmacology, Weill Medical College, Cornell University, New York, NY 10065, USA.
Cell
|May 22, 2012
概括
N6-甲基氨酸 (m6A) 是一种常见的RNA修饰,在成千上万的哺乳动物基因中发现. 这项研究绘制了m6A位点的地图,揭示了它在基因调节中的作用,特别是在大脑发育过程中.
科学领域:
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 分子生物学分子生物学
- 基因组学就是基因组学.
背景情况:
- N6-甲基氨酸 (m6A) 是一种普遍存在的RNA修饰,其功能在很大程度上未知.
- 与肥胖相关的FTO基因编码m6A脱甲基酶,突出显示m6A的生理重要性.
研究的目的:
- 开发一种用于在整个转录组中映射m6A修饰的方法.
- 确定含有m6A的哺乳动物mRNA并探索其调节作用.
主要方法:
- 甲基化RNA免疫沉测序 (MeRIP-Seq) 用于描述m6A局部化的情况.
- 这种技术结合了基于抗体的m6A修饰RNA的丰富和下一代测序.
主要成果:
- 在7,676个哺乳动物基因的mRNA中确定了m6A修饰,这表明其广泛存在.
- m6A的分布是组织特异的,在大脑发育过程中观察到显著增加.
- m6A位点经常位于停止编码子附近和3' UTRs内,经常与microRNA结合位点重叠.
结论:
- m6A是哺乳动物中常见的和动态调节的mRNA修饰.
- 这项研究为了解m6A基质和表观遗传调节提供了有价值的数据集.
- 研究结果表明m6A在转录后基因调节中起着关键作用,特别是在神经发育中.
相关概念视频
RNA Stability
36.1K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
36.1K
MicroRNAs
4.2K
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns (non-coding regions of a gene) or intergenic regions (stretches of DNA present between genes). Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself, forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After the pre-miRNA...
4.2K
MicroRNAs
24.5K
MicroRNA (miRNA) are short, regulatory RNA transcribed from introns—non-coding regions of a gene—or intergenic regions—stretches of DNA present between genes. Several processing steps are required to form biologically active, mature miRNA. The initial transcript, called primary miRNA (pri-mRNA), base-pairs with itself forming a stem-loop structure. Within the nucleus, an endonuclease enzyme, called Drosha, shortens the stem-loop structure into hairpin-shaped pre-miRNA. After...
24.5K
Pre-mRNA Processing: Modification of pre-mRNA Ends
16.8K
In eukaryotic cells, transcripts made by RNA polymerase are modified and processed before exiting the nucleus. Unprocessed RNA is called precursor mRNA or pre-mRNA to distinguish it from mature mRNA.
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
Once about 20-40 ribonucleotides have been joined together by RNA polymerase, a group of enzymes adds a cap to the 5' end of the growing transcript. In this process, a 5' phosphate is replaced by modified guanosine that has a methyl group attached (7-methyl guanosine). This 5' cap helps...
16.8K
Ribosome Profiling
4.3K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.3K
Chromatin Structure Regulates pre-mRNA Processing
8.4K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
8.4K


