鼠标基因组中cis调节序列的地图
Yin Shen1, Feng Yue, David F McCleary
1Ludwig Institute for Cancer Research, 9500 Gilman Drive, La Jolla, California 92093-0653, USA.
Nature
|July 6, 2012
概括
研究人员在19个组织中绘制了近30万只老鼠的cis-regulatory序列. 这种关键的小鼠基因组注释有助于理解人类基因组功能和基因调节.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 生物信息学是一种生物信息学.
背景情况:
- 鼠是生物医学研究中的一个关键的哺乳动物模型生物.
- 鼠标基因组与人类基因组具有高度保护性,使其注释对人类生物学有价值.
- 在小鼠基因组中,功能和 cis-regulatory 序列在很大程度上没有被注释.
研究的目的:
- 为了全面地绘制小鼠基因组中的cis-regulatory序列.
- 确定组织特异性增强剂及其调节转录因子.
- 了解小鼠基因组内的调节元素的组织.
主要方法:
- 在19种不同的小鼠组织和细胞类型中利用染色体免疫沉测序 (ChIP-Seq).
- 应用比较基因组学原理来识别保存的非编码序列.
- 集成的ChIP-Seq数据与现有的基因组注释.
主要成果:
- 创建了大约30万个小鼠cis-regulatory序列的地图,覆盖了小鼠基因组的11%.
- 在70%以上保存的非编码序列中注释.
- 鉴定了特定组织增强剂和潜在的转录因子,揭示了协调调节领域.
结论:
- 这项研究为标注哺乳动物基因组中的功能元素提供了宝贵的资源.
- 这些发现增强了我们对组织特异性基因表达机制的理解.
- 这张全面的地图有助于未来对老鼠和人类基因组的研究.
相关概念视频
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
Cooperative Binding of Transcription Regulators
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form dimers that...
Co-activators and Co-repressors
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
Master Transcription Regulators
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Multi-species Conserved Sequences
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved DNA...
Cis-regulatory Sequences
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...


