六米螺旋酶DnaB在转位过程中采用非平面形状
Ornchuma Itsathitphaisarn1, Richard A Wing, William K Eliason
1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.
Cell
|October 2, 2012
概括
细菌DNA螺旋酶DnaB对于DNA复制至关重要,在单链DNA周围形成螺旋楼梯结构. 这种结构揭示了一个独特的手对手转位机制来解开DNA.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- DNA聚合酶需要单链DNA (ssDNA) 模板进行合成.
- 细菌DNA复制依赖于复制性DNA螺旋酶,如DnaB,以解开双重DNA.
- DnaB将NTP水解合到指向的5'到3'转位.
研究的目的:
- 阐明DnaB的转移机制的结构基础.
- 为了提供对超级家族IV螺旋酶的解过程的见解.
- 将DnaB机制与其他已知的酶超级家族进行比较.
主要方法:
- DnaB六合体的X射线晶体学.
- 复杂的形成与GDP-AlF(4) 和ssDNA.
- 四元结构的结构分析和ssDNA协调.
主要成果:
- 晶体结构显示DnaB在A型ssDNA周围形成一个封闭的螺旋楼梯.
- 每个 DnaB C 终端域都协调了 ssDNA 的两个核酸.
- 结构表明转位机制与其他酶超级家族不同.
结论:
- DnaB使用了手对手机制来沿着ssDNA进行转位.
- 序列NTP水解驱动序列子单元运动,解DNA.
- 这种机制为我们提供了对超家族IV螺旋酶中DNA解的新理解.
相关概念视频
DNA Helicases
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
Single-Strand DNA Binding Proteins
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
DNA Topoisomerases
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
The Replisome
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The Replisome
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with the...
The DNA Replication Fork
An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork. Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication forks, one in...


