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在终端基上,可以与蛋白质酶中的活性位点氨酸核友反应
Reggy Ekkebus1, Sander I van Kasteren, Yogesh Kulathu
1Division of Cell Biology, The Netherlands Cancer Institute, Amsterdam, The Netherlands.
研究人员开发了一种新型的活性部位定向探头,使用改性无素 (Ub) 与基因. 这种探测器选择性地准除ubiquitinating酶,揭示了对酶功能和蛋白质相互作用的新见解.
科学领域:
- 生物化学 生物化学
- 化学生物学 化学生物学
- 蛋白质组学是指蛋白质组学.
背景情况:
- 活动部位定向探头是研究酶机制的重要工具.
- 乌比基 (Ub) 修改为探针开发提供了一个独特的策略.
- 在探测器设计中某些弹头的反应性仍然未被充分探索.
研究的目的:
- 开发和描述一种基于改造的无处不在分子的新型活动场所定向探头.
- 为了探索基核弹头的选择性反应性,使用去基化酶.
- 通过蛋白质组分析验证探头在识别酶点方面的实用性.
主要方法:
- 在C端引入基因功能时,用化学方法对ubiquitin进行修饰.
- 生物化学试验,以评估选择性反应与de-ubiquitinating酶.
- 进行X射线晶体学以确定反应产物的结构.
- 蛋白质组学分析使用固定式泛素基因探针来识别结合伙伴.
主要成果:
- 一个新的ubiquitin alkyne探针成功合成.
- 探针选择性地与除ubiquitinating酶的活性部位氨酸反应,形成四级乙烯基 thioether.
- X射线结晶学证实了共价 adduct 的结构.
- 蛋白质组分析证实了该探针对除化酶的特异性.
- 这种反应性也被证明与caspase-1使用一个propargylated基质.
结论:
- 乌比奎丁的C端基因修饰作为一种有效的活性部位定向探针.
- 这种方法可以选择性地准和识别de-ubiquitinating酶.
- 这些发现扩大了基基探针在化学生物学和酶研究中的实用性.
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相关概念视频
Preparation of Alkynes: Alkylation Reaction
Alkylation of terminal alkynes with primary alkyl halides in the presence of a strong base like sodium amide is one of the common methods for the synthesis of longer carbon-chain alkynes. For example, treatment of 1-propyne with sodium amide followed by reaction with ethyl bromide yields 2-pentyne.
Acidity of 1-Alkynes
The acidic strength of hydrocarbons follows the order: Alkynes > Alkenes > Alkanes. The strength of an acid is commonly expressed in units of pKa — the lower the pKa, the stronger the acid. Among the hydrocarbons, terminal alkynes have lower pKa values and are, therefore, more acidic. For example, the pKa values for ethane, ethene, and acetylene are 51, 44, and 25, respectively, as shown here.
Alkynes to Carboxylic Acids: Oxidative Cleavage
Alkynes to Aldehydes and Ketones: Acid-Catalyzed Hydration
Analogous to alkenes, alkynes also undergo acid-catalyzed hydration. While the addition of water to an alkene gives an alcohol, hydration of alkynes produces different products such as aldehydes and ketones.
α-Alkylation of Ketones via Enolate Ions
Electrophilic Addition to Alkynes: Halogenation
Halogenation is another class of electrophilic addition reactions where a halogen molecule gets added across a π bond. In alkynes, the presence of two π bonds allows for the addition of two equivalents of halogens (bromine or chlorine). The addition of the first halogen molecule forms a trans-dihaloalkene as the major product and the cis isomer as the minor product. Subsequent addition of the second equivalent yields the tetrahalide.