通过CXXC域蛋白 IDAXC调节TET2表达和5-甲基细胞因氧化
Myunggon Ko1, Jungeun An, Hozefa S Bandukwala
1Division of Signaling and Gene Expression, La Jolla Institute for Allergy & Immunology, La Jolla, California 92037, USA.
Nature
|April 9, 2013
概括
蛋白质IDAX (CXXC4) 通过与DNA结合并导致TET2降解来调节TET2的表达,从而影响DNA甲基化擦除. 这项研究揭示了IDAX作为TET2和TET3活动的新型调节剂.
科学领域:
- 表观遗传学和基因调控
- 分子生物学分子生物学
- 生物化学 生物化学
背景情况:
- 十一转位 (TET) 蛋白质是活性DNA脱甲基化过程中至关重要的二氧化酶.
- 一种Wnt信号传递抑制剂的IDAX (CXXC4) 与癌症有关.
- 伊达克斯从一个祖先的TET2基因进化,将其CXXC域与催化域分开.
研究的目的:
- 研究IDAX对TET2蛋白表达和活性的调控作用.
- 阐明IDAX影响TET2水平的机制.
- 探索对TET蛋白调节和DNA甲基化动态的更广泛影响.
主要方法:
- 对IDAX与TET2的催化域相互作用的分析.
- 使用其CXXC域评估IDAX的DNA结合特性.
- 在细胞模型中对IDAX表达 (枯竭和shRNA) 的实验操纵.
- 在不同的IDAX条件下研究酶激活和TET蛋白水平.
主要成果:
- IDAX与非甲基化CpGDNA序列结合,并与TET2催化域相互作用.
- IDAX表达导致酶激活和TET2蛋白降低调节,这取决于IDAX的DNA结合CXXC域.
- 减少IDAX可以防止TET2在分化小鼠胚胎干细胞中的下调,而减少IDAX可以增加U937细胞中的TET2表达.
- 通过其CXXC域,TET3的表达和活动也受到调节.
结论:
- 伊达克斯作为TET2的新型调节剂,通过依赖DNA结合的机制调解其降解.
- IDAX的单独的CXXC域和TET3的链接的CXXC域被确定为酶激活和TET酶活性的关键调节者.
- 这些发现为复杂的DNA甲基化调节及其在疾病中的潜在作用提供了新的见解.
相关概念视频
Master Transcription Regulators
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Inheritance of Chromatin Structures
Epigenetics is the study of inherited changes in a cell's phenotype without changing the DNA sequences. It provides a form of memory for the differential gene expression pattern to maintain cell lineage, position-effect variegation, dosage compensation, and maintenance of chromatin structures such as telomeres and centromeres. For example, the structure and location of the centromere on chromosomes are epigenetically inherited. Its functionality is not dictated or ensured by the underlying DNA...
X-Inactivation
The human X chromosome contains over ten times the number of genes as in the Y chromosome. Since males have only one X chromosome, and females have two, one might expect females to produce twice as many of the proteins, with undesirable results.
Histone Modification
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone deacetylase,...
Chromatin Modification in iPS Cells
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Epigenetic Regulation
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
X-chromosome...


