在可控制的DNA链位移反应中,基于DNA四个复合体的脚激活
Wei Tang1, Huaming Wang, Dingzhong Wang
1Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University , Beijing 100871, China.
Journal of the American Chemical Society
|September 7, 2013
概括
研究人员开发了一种新的DNA装置策略,使用DNA四重复合来控制DNA链位移反应. 这种方法允许微调环境刺激的反应速率,扩大动态分子装置的可能性.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 纳米技术 纳米技术
背景情况:
- 动态DNA设备通常依赖于脚介导的链位移.
- 目前的方法受到双链杂交的限制,缺乏多功能控制.
- 需要加强对DNA链位移动力学的控制.
研究的目的:
- 为动态DNA设备提出一种新的脚激活策略.
- 通过使用环境刺激,精确控制DNA链移位率.
- 扩大响应性分子设备的设计原则.
主要方法:
- 使用DNA四重复 (G-四重复或i-动机) 设计了一种脚激活策略.
- 整合了一个补充的单链段 (CS),连接到富G/富C的段.
- 调制的G四重奏/C·C(+) 数和CS长度以调整动力学.
主要成果:
- 在两个数量级上实现了对DNA链位移速率的精细控制.
- 通过调整环境刺激度来证明可调性.
- 成功扩展了动态DNA设备的设计规则.
结论:
- 拟议的基于四的脚激活策略为DNA链位移提供了增强的控制.
- 这种方法允许开发多种多样的分子装置,以响应环境线索.
- 该战略扩大了用于设计复杂的基于DNA的纳米机器的工具包.
相关概念视频
Translesion DNA Polymerases
Translesion (TLS) polymerases rescue stalled DNA polymerases at sites of damaged bases by replacing the replicative polymerase and installing a nucleotide across the damaged site. Doing so, TLS allows additional time for the cell to repair the damage before resuming regular DNA replication.
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
TLS polymerases are found in all three domains of life - archaea, bacteria, and eukaryotes. Of the different classes of TLS polymerases, members of the Y family are fitted with specialized structures that...
DNA Topoisomerases
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
Types and Mechanism of action
Topoisomerases are divided into two main types. Type I...
DNA Helicases
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
Homologous Recombination
The basic reaction of homologous recombination (HR) involves two chromatids that contain DNA sequences sharing a significant stretch of identity. One of these sequences uses a strand from another as a template to synthesize DNA in an enzyme-catalyzed reaction. The final product is a novel amalgamation of the two substrates. To ensure an accurate recombination of sequences, HR is restricted to the S and G2 phases of the cell cycle. At these stages, the DNA has been replicated already and the...
Single-Strand DNA Binding Proteins
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
Lagging Strand Synthesis
During replication, the complementary strands in double-stranded DNA are synthesized at different rates. Replication first begins on the leading strand. Replication starts later, occurs more slowly, and proceeds discontinuously on the lagging strand.
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...
There are several major differences between synthesis of the leading strand and synthesis of the lagging strand. 1) Leading strand synthesis happens in the direction of replication fork opening, whereas lagging strand synthesis happens in the...


