转录组和基因组测序揭示了人类的功能变异
Tuuli Lappalainen1, Michael Sammeth, Marc R Friedländer
1Department of Genetic Medicine and Development, University of Geneva Medical School, 1211 Geneva, Switzerland. tuuli.e.lappalainen@gmail.com
Nature
|September 17, 2013
概括
遗传变异广泛影响基因调节和表达,揭示了人类特征和疾病背后的机制. 这项研究分析了RNA测序数据,以绘制人类种群中的功能遗传变异.
科学领域:
- 基因组学就是基因组学.
- 文字转录学 (Transcriptomics) 是一个学科.
- 人类遗传学 人类遗传学
背景情况:
- 数以百万计的遗传变异是通过基因组测序发现的.
- 解释这些变异的功能影响对于理解人类特征变异至关重要.
- 高通量RNA测序为基因表达和调节提供了洞察力.
研究的目的:
- 分析来自462个个体的淋巴细胞细胞系的信使RNA (mRNA) 和microRNA (miRNA).
- 描述影响基因调节和表达的广泛遗传变异.
- 推断疾病相关位置的因果变异.
主要方法:
- 对mRNA和miRNA进行测序和深度分析.
- 利用来自1000个基因组项目的统一处理,高通量RNA测序数据.
- 整合RNA测序数据与高质量的人类基因组序列.
主要成果:
- 发现了极为广泛的基因变异,影响了大多数基因的调节.
- 识别转录结构和表达水平中常见但遗传独立的变异.
- 因果调节变化的表征,阐明细胞机制.
- 推断许多与疾病相关的位置的假定因果变异.
结论:
- 遗传变异显著影响人类种群中的转录组调节和表达.
- 这项研究增强了对细胞机制的理解,这些机制是监管和功能丧失变异的基础.
- 提供了人类基因组中功能变异的全面景观.
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