哺乳动物发育过程中全基因组增强剂使用的快速和普遍变化
Alex S Nord1, Matthew J Blow2, Catia Attanasio1
1Genomics Division, MS 84-171, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Cell
|December 24, 2013
概括
这项研究揭示了小鼠发育过程中的动态增强剂活性. 大多数已识别的增强剂都显示出暂时受限的活性,这对于特定阶段的基因调节和发育至关重要.
科学领域:
- 基因组学就是基因组学.
- 发展生物学 发展生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
背景情况:
- 增强剂对于组织特异性基因表达至关重要,但它们在发育过程中的动态活性尚不清楚.
- 全基因组增强剂注释正在推进,但时间模式和体内作用在很大程度上仍未被探索.
研究的目的:
- 研究哺乳动物发育过程中增强剂的全基因组利用和时间活性.
- 了解动态增强剂在不同组织和发育阶段的功能作用.
主要方法:
- 利用表观基因组分析 (H3K27ac) 来识别活性增强剂.
- 采用转基因小鼠测试来检查三个组织的七个发育阶段的增强剂活性.
- 进行了比较基因组分析,以评估进化保护.
主要成果:
- 确定了大约9万种增强剂,其活动窗口受到严格的时间限制.
- 发现增强剂与特定阶段的生物功能和调节途径有关.
- 在怀孕中期后观察到增强剂的进化保存率下降.
结论:
- 增强剂的使用在哺乳动物发育过程中具有高度动态性和暂时调节.
- 增强剂活性中的这些动态变化对发育过程和疾病至关重要.
- 这项研究提供了一个全基因组的视图的时间增强器动态 in vivo.
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