单细胞RNA-seq揭示了细胞变异的动态膜控制
Alex K Shalek1, Rahul Satija2, Joe Shuga3
11] Department of Chemistry & Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, USA [2] Department of Physics, Harvard University, 17 Oxford Street, Cambridge, Massachusetts 02138, USA [3] Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, Massachusetts 02142, USA [4].
Nature
|June 12, 2014
概括
细胞对细胞的沟通塑造了基因表达异质性. 偏信号传递,特别是干扰素介导的信号,协调早期的抗病毒反应,并影响树突细胞中的炎症基因表达.
科学领域:
- 免疫学 免疫学 免疫学
- 系统生物学 系统生物学
- 基因组学就是基因组学.
背景情况:
- 高通量单细胞转录组学使得对基因表达变异的公正研究成为可能.
- 了解细胞异质性对于破译生物功能至关重要.
研究的目的:
- 在初级小鼠骨髓衍生的树突细胞中研究基因表达异质性.
- 阐明细胞间通信在协调细胞反应中的作用.
主要方法:
- 超过1700个树突细胞的单细胞RNA测序.
- 在微流体室中进行刺激,对淘汰的小鼠进行分析,并调节细胞外信号传输.
- 研究了不同基因模块的时间异质性概况.
主要成果:
- 在同样刺激的树突细胞中发现了基因表达的实质性变异.
- 发现了由"早熟"细胞早期表达的抗病毒基因的"核心"模块,由干扰素介导的膜信号协调.
- 证明了膜信号也抑制炎症基因表达,减少细胞的变异性.
结论:
- 细胞间的通信是细胞异质性的关键驱动力.
- 副信号编排动态基因表达程序,包括抗病毒和炎症反应.
- 多细胞种群利用沟通策略来建立复杂的动态反应.
相关概念视频
RNA-seq
9.4K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases.
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.4K
Regulation of Expression at Multiple Steps
1.3K
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
1.3K
Cell Specific Gene Expression
4.9K
4.9K
Cell Specific Gene Expression
13.2K
Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
13.2K
Chromatin Modification in iPS Cells
1.5K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
1.5K
Regulation of Expression Occurs at Multiple Steps
20.2K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
20.2K


