对HDAC8的抑制和机制进行了修订
Kai Chen1, Xiaoxiao Zhang, Yun-Dong Wu
1Lab of Computational Chemistry and Drug Design, Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School , Shenzhen 518055, China.
Journal of the American Chemical Society
|July 26, 2014
概括
量子力学/分子力学 (QM/MM) 的计算阐明了基因素脱乙酶 (HDAC) 的抑制机制. 该研究揭示了HDAC8中的自发质子转移,有助于设计各种疾病的药物.
科学领域:
- 生物化学 生物化学
- 计算化学计算化学
- 药理学 药理学是指药理学的学科.
背景情况:
- 基因组脱乙酶 (HDACs) 是许多疾病的关键药物标.
- 关于HDAC抑制和机制的现有知识仍在争论中.
- 了解HDAC的功能对于开发有效的治疗方法至关重要.
研究的目的:
- 使用先进的计算方法阐明HDAC8抑制的详细机制.
- 调和先前对HDACs的机制建议中的差异.
- 为设计新型HDAC抑制剂提供见解,包括IIa类HDACs.
主要方法:
- 运用量子力学/分子力学 (QM/MM) 计算,使用一个大的量子区域.
- 模拟HDAC8与各种已知的抑制剂结合使用.
- 分析了抑制剂结合和催化活性的结构和能量方面.
主要成果:
- 计算模型与现有的晶体结构和结构-活动关系保持一致.
- 在结合后,从胺酸抑制剂到活性部位histidine的自发质子转移被证明.
- 确定了H142/D176催化二作为反应中的一般基的作用.
- 解释了之前的机械学分歧,并突出了附近离子的功能.
结论:
- 这项研究为HDAC8抑制提供了一个一致的机制模型.
- 详细介绍了二和离子的催化作用.
- 这些发现对治疗应用新型HDAC抑制剂的合理设计具有重大意义.
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