由环形ATPase电机在毫秒分辨率下进行基质转位的机制
1Center for Biophysics and Computational Biology and Beckman Institute for Advanced Science and Technology and ‡Department of Physics, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Journal of the American Chemical Society
|February 4, 2015
概括
罗因子电机使用ATP水解来移动RNA,由产品释放和构造变化驱动. 这揭示了环形ATPase电机的原子水平机制.
科学领域:
- 生物化学 生物化学
- 分子生物学分子生物学
- 结构生物学 结构生物学
背景情况:
- 环状的六体ATPase电机对于细胞过程至关重要,如DNA复制和蛋白质降解.
- 了解ATP水解驱动基质转位的机制仍然是一个挑战.
研究的目的:
- 为了阐明由Rho因子转移的mRNA转位的原子级机制,Rho因子是一个同质hexameric电机.
- 描述从ATP水解转移到机械力生成的能量转移.
主要方法:
- 所有原子的分子动力学模拟.
- 先进的路径采样技术.
- 里程碑分析. 里程碑分析.
主要成果:
- 产品释放 (ADP + Pi) 通过0.1毫秒的变形过渡触发了Rho的力量生成过程.
- RNA转位发生在Rho的形态状态的人口转移中.
- 六个K326侧链将RNA拉过两个新的中间状态.
结论:
- 该研究揭示了Rho介导RNA转位的详细机制,涉及协调的亚单元运动.
- 它强调了水解反应剂和产物状态在协调运动作用中的作用.
- 这种方法可以识别多重酶中的全位.
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