单细胞染色体的可访问性揭示了监管变异的原理
Jason D Buenrostro1, Beijing Wu2, Ulrike M Litzenburger3
11] Department of Genetics, Stanford University School of Medicine, Stanford, California 94305, USA [2] Program in Epithelial Biology and the Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, California 94305, USA.
Nature
|June 18, 2015
概括
这项研究揭示了DNA调节变异如何产生细胞间的差异. 新的单细胞方法绘制了基因组可访问性,揭示了控制细胞变异性和3D基因组组织的因素.
科学领域:
- 基因组学就是基因组学.
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
- 细胞生物学 细胞生物学
背景情况:
- 细胞间的变异在生物学中至关重要,影响发育和疾病.
- 从相同的DNA产生这种变异性的机制尚不清楚.
研究的目的:
- 在单细胞水平上绘制DNA调节变异的地图.
- 确定控制哺乳动物DNA调节变异的原则.
主要方法:
- 开发了一个微流体学平台,使用测序 (ATAC-seq) 集成检测转化酶可访问的染色质.
- 应用单细胞ATAC-seq (scATAC-seq) 来分析个体细胞基因组.
- 分析了与转变因子和 cis 元素相关的可访问性差异.
主要成果:
- scATAC-seq配置文件反映了大部分的ATAC-seq,提供了对细胞对细胞变异的洞察力.
- 识别了诱导或抑制变化的转变因子.
- 发现了细胞类型特定的变异性模式,并将其与3D基因组组织联系起来.
结论:
- 单细胞DNA可访问性分析为"规律体"提供了新的见解.
- 这种方法促进了对推动细胞异质性的基本机制的理解.
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