合作性静电相互作用驱动了性酸酶超级家族的功能性进化
Alexandre Barrozo1, Fernanda Duarte1, Paul Bauer1
1Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala University, BMC Box 596, SE-751 24, Uppsala, Sweden.
Journal of the American Chemical Society
|June 21, 2015
概括
催化性乱交使酶进化成为可能. 计算模型显示,性酸酶中的合作电静相互作用允许适应多种基质,驱动酶选择性和人工设计的乱交.
科学领域:
- 生物化学 生物化学
- 酶动力学 酶动力学
- 计算生物学是一种计算生物学.
背景情况:
- 催化性杂交,即酶处理多个基质的能力,对于新酶功能的进化至关重要.
- 性酸酶超级家族作为研究酶多功能性的模型系统.
研究的目的:
- 模拟来自Burkholderia caryophylli和Rhizobium leguminosarum的两个乱交的酸盐单水解酶的选择性.
- 为了研究这种超级家族中酶乱交背后的机制.
主要方法:
- 对野生类型和突变酶进行了广泛的计算模拟.
- 对酶反应机制,过渡状态几何学和活性位点残留物贡献的分析.
- 通过性酸盐酶对结构和静电特征的比较.
主要成果:
- 计算模型准确地重现了实验数据,包括酶活性和pH值概况.
- 基质结合发生在具有最小扰乱过渡状态的类似构造中.
- 在活性部位内的合作性静电相互作用被确定为广泛基质乱交的关键驱动因素.
结论:
- 这些酶的广泛杂交源于活性部位的适应性静电相互作用.
- 这种机制可能是性酸酶超级家族中驱动选择性和乱交的一般特征.
- 这些发现可以为新型人工酶的设计提供信息.
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