转录调节器组成了不同的组,其调节功能取决于环境
Gerald Stampfel1, Tomáš Kazmar1, Olga Frank1
1Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Dr. Bohr-Gasse 7, 1030 Vienna, Austria.
Nature
|November 10, 2015
概括
转录因子 (TF) 和辅因子通过调节增强剂来控制基因表达. 这项研究揭示了不同背景的TF功能,并确定了15个功能组,表明TF可以相互替代.
科学领域:
- 分子生物学
- 遗传学
- 发育生物学
背景情况:
- 基因表达受转录因子 (TF) 和调节增强剂的辅因子控制.
- 研究了TF结合,但它们对增强剂功能的组合控制仍然不清楚.
- 了解TF在组合激活和功能分组中的作用至关重要.
研究的目的:
- 系统地评估TF和辅助因子在组合增强剂控制中的监管作用.
- 确定TF的功能组,并了解它们的上下文依赖的活动.
- 在增强器功能中探索TF替代和TF辅助因子合作.
主要方法:
- 在Drosophila S2细胞中使用增强剂补充试验.
- 在24个增强剂环境中测试了812个GAL4-DNA结合域的TF和辅助因子.
- 进行了82,752个光酶测试以测量增强剂活性.
主要成果:
- 大多数测试的因子显示出上下文依赖的功能,其影响范围从抑制到289倍激活.
- 根据活动模式,发育角色和序列特征定义了15个功能TF组.
- 证明了用于增强器重新设计的TF动机交换,并确定了合作/相互作用的TF辅助因子对.
结论:
- TF和辅助因素的监管功能是多样化的,并且高度依赖于环境.
- 功能分组和替代原理为组合增强剂控制提供了洞察力.
- 系统性表征有助于理解增强剂对基因的调节.
相关概念视频
Co-activators and Co-repressors
8.9K
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
8.9K
Co-activators and Co-repressors
3.2K
3.2K
Cooperative Binding of Transcription Regulators
7.5K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
7.5K
Cooperative Binding of Transcription Regulators
2.7K
2.7K
Cis-regulatory Sequences
12.2K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
12.2K
Cis-regulatory Sequences
4.3K
4.3K


