在蛋白质通道中模仿RNA伪结的核糖体展开
Xinyue Zhang1, Xiaojun Xu1, Zhiyu Yang1
1Department of Bioengineering and Dalton Cardiovascular Research Center, ‡Department of Physics, Department of Biochemistry, and Informatics Institute, §Department of Chemistry and Department of Biochemistry, University of Missouri , Columbia, Missouri 65211, United States.
Journal of the American Chemical Society
|November 24, 2015
概括
这项研究引入了纳米孔测试来调查RNA伪结的展开,揭示了对mRNA翻译调节至关重要的两步机制. 最初的步骤,无论拉向方向如何,都涉及解开第一个螺旋域.
科学领域:
- 分子生物学
- 生物物理
- 结构生物学
背景情况:
- RNA伪结是调节mRNA翻译的必要的三级结构.
- 光学子可以研究伪结的展开,但可能不会反映体内通路.
- 在体内,翻译过程中以矢量方式发生 (5'到3'端).
研究的目的:
- 开发一种模仿核糖体的纳米孔测试方法,用于剖析向量伪结的展开.
- 研究RNA伪结的方向依赖的动态展开机制.
- 提供关于RNA三级结构稳定和生物功能的见解,
主要方法:
- 开发了一种纳米孔拉力测试,使用DNA领导控制拉力方向 (5' → 3'或3' → 5').
- 利用DNA和RNA之间的纳米孔导电差异来跟踪RNA的位置和结构.
- 在不同的拉向下分析展开的路径和动力学.
主要成果:
- 证明伪结的展开是一个双步,多态,金属离子调节的过程.
- 确定两个方向的速度限制步骤为第一个螺旋域 (Helix-1或Helix-2) 的解锁.
- 显示最初的展开需要克服非正规基对和同轴堆叠的能量障碍.
结论:
- 纳米孔检测有效地剖析了载体RNA伪结的展开机制.
- 最初的螺旋解锁是保持速度的限制步骤,无论拉向方向如何.
- 这些发现增强了对RNA结构,动力学和翻译和框架转移中的生物作用的理解.
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