没有细胞的DNA包含一个活体核体足迹, 告知其起源的组织
Matthew W Snyder1, Martin Kircher1, Andrew J Hill1
1Department of Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Cell
|January 16, 2016
概括
无细胞DNA (cfDNA) 核细胞足迹显示出细胞类型的起源. 这种方法从血中绘制全基因组核细胞占用率,有助于非侵入性疾病监测.
科学领域:
- 基因组学
- 表观遗传学
- 分子生物学
背景情况:
- 核细胞的定位是特定于细胞类型的.
- 无细胞DNA (cfDNA) 在血中循环.
- cfDNA片段可以保留表观遗传信息.
研究的目的:
- 使用cfDNA在体内绘制全基因组核细胞占用率.
- 确定cfDNA核细胞足迹是否可以识别细胞来源类型.
- 探索非侵入性疾病监测的可能性.
主要方法:
- 从血中深度测序cfDNA.
- 从cfDNA片段中分析核细胞占用率和间距.
- 已知细胞结构和基因表达的cfDNA表观特征的相关性.
主要成果:
- 短cfDNA片段含有转录因子结合的足迹.
- cfDNA核体占用与细胞核架构,基因结构和表达相关.
- 在健康个体中,cfDNA核细胞间距与淋巴细胞和骨髓细胞表观遗传特征保持一致.
- 核酶足迹可以区分cfDNA中的贡献细胞类型,包括癌症.
结论:
- cfDNA核体足迹提供了关于细胞起源类型的见解.
- 这种方法提供了一个非遗传方法来推断组织对cfDNA的贡献.
- 该策略对各种临床情况的非侵入性监测具有前景.
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