一个全蛋白质分裂酵母相互作用揭示了从酵母到人类的网络进化原理
Tommy V Vo1, Jishnu Das2, Michael J Meyer3
1Department of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853, USA; Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, NY 14853, USA; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Cell
|January 16, 2016
概括
裂变网络揭示了裂变酵母 (S. pombe) 中成千上万种新的蛋白质相互作用,揭示了新的生物途径和酵母和人类蛋白质之间的惊人的进化联系.
科学领域:
- 蛋白质组学
- 酵母遗传学
- 系统生物学
背景情况:
- 了解蛋白与蛋白的相互作用对于解读细胞功能至关重要.
- 跨物种的比较互动学可以揭示进化保护和分歧.
- 像分裂酵母 (S. pombe) 这样的模型生物对于研究基本的生物过程至关重要.
研究的目的:
- 为S. pombe构建一个全面的蛋白质宽二元蛋白质相互作用图.
- 研究特定物种的蛋白质相互作用网络的重新连接.
- 探索蛋白质与蛋白质相互作用的进化保护.
主要方法:
- 生成FissionNet,一个高质量的S. pombe二元蛋白互动组数据集.
- 开发一个对测试敏感性和特异性的网络比较框架.
- 跨物种互动组映射和基因复制效应的分析.
主要成果:
- 裂变网包括2,278种高质量的S. pombe相互作用,其中约50%是新鲜的.
- 在基因沉默和mRNA前拼接中发现了新的相互作用.
- 发现了广泛的物种特异性网络重新连接,S. pombe的相互作用在人类中比S. cerevisiae保存得更好.
结论:
- 分裂网为了解蛋白质的功能和进化提供了宝贵的资源.
- 比较互动组学突出显著的进化重新连接和相互作用蛋白质的共同进化.
- 这些发现对使用模型生物来研究人类疾病有意义.
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