对人类转录因子变异的调查揭示了普遍存在的DNA结合变化
Luis A Barrera1,2,3,4, Anastasia Vedenko1, Jesse V Kurland1
1Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
概括
大多数人由于遗传变异而具有独特的转录因子 (TF) DNA结合活动. 这项研究探讨了TF变体
科学领域:
- 遗传学
- 分子生物学
- 生物信息学
背景情况:
- 基因测序揭示了人类转录因子 (TF) 的众多变异.
- 这些TF基因变异对DNA结合的功能影响在很大程度上是未知的.
- 了解这些变异对于解释人类遗传多样性和疾病至关重要.
研究的目的:
- 通过计算和实验评估遗传变异对人类转录因子DNA结合活性的影响.
- 识别改变DNA结合亲和力或特异性的特定TF变异.
- 探索TF结合变异的流行率和潜在的表型后果.
主要方法:
- 开发了一种基于结构的计算方法来预测TF变体对DNA结合的影响.
- 使用通用蛋白结合微阵列来实验测量特定序列的DNA结合活性.
- 测试了来自不同种群和孟德尔病群的41个参考和117个变异TF等位基因.
主要成果:
- 在28个基因中确定了77个变异,这些变异显著影响了TF DNA的结合亲和力或特异性.
- 发现了数千个罕见的基因基因,预计会改变人类特定序列TF的DNA结合活性.
- 证明大多数个体拥有不同的TFDNA结合谱.
结论:
- 转录因子的遗传变异经常改变它们的DNA结合能力.
- 这些TFDNA结合活性的改变是常见的,可能导致个体的表型差异.
- 这项研究为评估基因变异对TF功能的功能影响提供了一个框架.
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