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活细胞中的RNA双重图揭示了更高阶的转录组结构
Zhipeng Lu1, Qiangfeng Cliff Zhang2, Byron Lee1
1Center for Personal Dynamic Regulomes, Stanford University, Stanford, CA 94305, USA.
Cell
|May 17, 2016
概括
我们开发了PARIS,一种用于绘制活细胞RNA结构的新方法. 这项技术揭示了广泛的复杂RNA结构和相互作用,为RNA结构和相互作用提供了新的见解.
科学领域:
- 分子生物学
- 遗传学
- 生物化学
背景情况:
- 对于其多样化的生物功能来说,RNA基配对至关重要.
- 了解RNA结构和相互作用对于解读细胞过程至关重要.
研究的目的:
- 开发一种高分辨率的活细胞RNA复合物的全球映射方法.
- 研究RNA结构和跨转录组的相互作用.
主要方法:
- 开发了PARIS (用于RNA相互作用和结构的psoralen交联),一种利用可逆psoralen交联的方法.
- 在人类和小鼠细胞类型中应用PARIS以接近基对分辨率绘制RNA复杂体.
- 使用PARIS数据来指导RNA结构的基因分析.
主要成果:
- 在转录组内识别出频繁的远程RNA结构和更高阶架构.
- 在单个分子水平上揭示了普遍的替代RNA构造.
- 发现保存的远程和替代RNA结构,包括XIST lncRNA中对X染色体无活化至关重要的复杂二重体.
结论:
- 巴黎为RNA结构和相互作用的全球绘制提供了一种多功能工具.
- 这项研究揭示了以前未知的广泛而复杂的RNA结构和相互作用.
- 基于PARIS的结构洞察力有助于理解RNA的功能,进化和调节,以XISTRNA在表观遗传沉默中的作用为例.
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