细胞组和细胞组特征塑造了调节性DNA的格局
Ronan C O'Malley1, Shao-Shan Carol Huang1, Liang Song2
1Genomic Analysis Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Rd., La Jolla, CA 92037, USA; Plant Biology Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey Pines Rd., La Jolla, CA 92037, USA.
Cell
|May 21, 2016
概括
DNA亲和性净化测序 (DAP-seq) 映射转录因子 (TF) 的结合位,定义了阿拉比多普西斯菌群. 这种方法揭示了广泛的TF甲基化敏感性,对于理解表和转录调节至关重要.
科学领域:
- 基因组学
- 分子生物学
- 表观遗传学
背景情况:
- 囊胞体代表生物体中的所有转录因子 (TF) 结合点.
- 基组将TF结合与DNA化学修饰和TF敏感性进行整合.
- 了解转录网络需要强大的cistrome和epicistrome映射方法.
研究的目的:
- 引入DNA亲属性净化测序 (DAP-seq) 作为TF结合部位发现的高通量方法.
- 构建一个完整的Arabidopsis的cistrome地图.
- 调查TF对DNA甲基化的敏感性.
主要方法:
- 使用DNA亲和净化测序 (DAP-seq) 来识别TF结合位点.
- 在体外表达的TF被用于检测基因组DNA.
- 分析了Arabidopsis的TF及其结合基因.
主要成果:
- 通过使用DAP-seq来解析529个TF的动机和峰值来定义Arabidopsis的细胞群.
- 在被调查的阿拉比多普西斯TF中,超过75%显示有甲基化敏感性.
- DAP-seq提供了TF生物学和绑定站点架构的见解.
结论:
- DAP-seq是一个有价值的工具,用于具有成本效益的cystromic和epicistromic注释.
- TF的甲基化敏感性对表层风景产生重大影响.
- 这种方法有助于阐明复杂的转录调节网络.
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