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影响红细胞特征的常见遗传变异的系统功能剖析
Jacob C Ulirsch1, Satish K Nandakumar1, Li Wang2
1Division of Hematology/Oncology, The Manton Center for Orphan Disease Research, Boston Children's Hospital and Department of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115, USA; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Cell
|June 4, 2016
概括
本研究使用大规模并行报告测定 (MPRA) 来识别影响红细胞特征的功能遗传变异. 这项研究指出了在红细胞发育过程中调节基因表达的特定变异.
科学领域:
- 基因组学
- 分子生物学
- 血液学
背景情况:
- 全基因组关联研究 (GWAS) 识别了许多与疾病相关的遗传变异,主要是在非编码区域.
- 解释这些非编码变体的功能影响需要复杂的实验方法.
研究的目的:
- 使用大规模并行报告测试 (MPRA) 选与红细胞特征相关的数千个遗传变异.
- 确定调节红细胞基因表达的功能变异,并了解它们在疾病途径中的作用.
主要方法:
- 使用MPRA同时测试与红细胞特征相关的2,756种变体的调节活性.
- 使用定向基因组编辑来验证已识别的功能变体的增强剂活性.
- 对RBM38等特定基因进行功能后续研究,以阐明它们在红色形成中的作用.
主要成果:
- 在23种与红细胞特征相关的哨兵变体中,确定了32种MPRA功能变体 (MFV).
- 对于3种影响SMIM1,RBM38和CD164转录的MFV,已显示内源增强剂活性.
- 发现RBM38在终端红色形成过程中的替代拼接中起着关键作用.
结论:
- 在识别与红细胞特征相关的功能调节元素方面,MPRA是有效的.
- 常见的GWAS变体可以破坏细胞类型特异性的转录调节,从而导致疾病表型.
- 解剖非编码变体的功能可以了解血液形成中的基因调节和疾病机制.
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