来自Streptomyces platensis CB00739的ent-Copalyl二酸酶 PtmT2的结构,是一种II型细菌二酸酶
Jeffrey D Rudolf1, Liao-Bin Dong1, Hongnan Cao2
1Department of Chemistry, The Scripps Research Institute , Jupiter, Florida 33458, United States.
Journal of the American Chemical Society
|August 5, 2016
概括
这项研究揭示了第一个细菌II型二二烯合成酶 (DTS) 结构,PtmT2. 这一发现有助于对细菌中的基生物合成和基合成酶 (TSs) 的演化进行了解.
科学领域:
- 生物化学
- 结构生物学
- 自然产品化学
背景情况:
- 类是多样化的天然产物,细菌类生物合成被低估了.
- 合成酶 (TSs) 通过循环级联催化类骨的形成.
- 对于TS,特别是II型细菌DTS的结构演变,目前尚不完全了解.
研究的目的:
- 确定第一个细菌II型DTS的晶体结构.
- 阐明细菌II型DTS的催化机制和进化作用.
主要方法:
- 来自Streptomyces platensis CB00739的PtmT2的X射线晶体,分辨率为1.80 Å.
- 模拟基质结合的分子对接研究.
- 定位基因突变以确定关键的催化残留物.
主要成果:
- 解决了PtmT2的晶体结构.
- 接表明基拉尼尔基拉尼尔二酸盐 (GGPP) 结合在一种催化活性构成中.
- 突变检测发现了GGPP二酸结合残留物和一个潜在的Mg2+结合基因 (DxxxxE).
结论:
- PtmT2结构为细菌II型DTS机制提供了关键的见解.
- 这项工作填补了从细菌祖先的TS结构进化理解的空白.
- 活性部位的特性决定了TS的催化特异性,进步了对细菌TS的了解.
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