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通过 lncRNA 促进体,转录和拼接对基因表达进行局部调节
Jesse M Engreitz1,2, Jenna E Haines1, Elizabeth M Perez1
1Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA.
Nature
|November 4, 2016
概括
长非编码RNAs (lncRNAs) 和蛋白质编码基因可以调节邻近的基因. 这些效应源于一般的转录过程,而不是特定的RNA分子,揭示了广泛的基因交叉交谈.
科学领域:
- 基因组学
- 分子生物学
- 基因调控
背景情况:
- 哺乳动物基因组广泛产生长非编码RNA (lncRNA).
- 据推测,lncRNAs可以局部调节附近的基因,从而解释表达相关性.
- 独立于lncRNA转录的替代机制也可能驱动这些相关性.
研究的目的:
- 研究 lncRNA 位点影响邻近基因表达的机制.
- 要确定 lncRNA 转录本身是否介导这些调节效应.
- 探索类似的 cis 调节机制是否适用于蛋白质编码基因.
主要方法:
- 在小鼠细胞系中进行基因操纵.
- 对12个 lncRNA 生产基因组位点的分析.
- 评估6个蛋白质编码位点的cis调节作用.
主要成果:
- 在12个 lncRNA 位点中,有5个影响了 cis 中的邻近基因表达.
- 调控效应与特定的 lncRNA 转录无关.
- 机制包括促进剂增强剂活性,转录和拼接.
- 六个蛋白质编码位点中的四个也对邻居表现出 cis 调节效应.
结论:
- 基因交叉交谈是一种普遍的现象,涉及多个 cis 调节机制.
- lncRNA生产位点可以通过一般的转录过程影响邻近的基因.
- 这些发现提供了关于lncRNA和蛋白质编码基因的功能和演变的见解.
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