不断变化的景观:转录增强器在发展和进化中
Hannah K Long1, Sara L Prescott2, Joanna Wysocka3
1Department of Chemical and Systems Biology, Stanford School of Medicine, Stanford University, Stanford, CA 94305, USA; Institute of Stem Cell Biology and Regenerative Medicine, Stanford School of Medicine, Stanford University, Stanford, CA 94305, USA.
Cell
|November 19, 2016
概括
增强剂是控制发育过程中基因表达的关键 cis 调节元素. 它们的序列和活动进化推动了物种间的表型变异,受基因组组织的影响.
科学领域:
- 基因组学
- 发育生物学
- 进化生物学
背景情况:
- 增强剂是指在发育过程中调节基因表达的关键环节.
- 增强剂序列和活性的分歧是物种内部和物种之间表型变化的关键驱动因素.
研究的目的:
- 提供增强器功能的新兴原则的概述.
- 讨论增强器架构,进化起源以及3D基因组组织的作用.
- 探索复杂的监管环境对转录监管的影响.
主要方法:
- 文献综述和对增强剂的当前研究.
- 对增强器功能和演变的新兴原则的分析.
- 影响基因调节的基因组和组织因素的讨论.
主要成果:
- 增强剂表现出复杂的结构,并在进化过程中从特定的基因组基板中出现.
- 三维基因组组织显著影响增强剂的长距离基因调节.
- 复杂的监管环境中的相互作用会影响转录的特异性和稳定性.
结论:
- 了解增强剂的功能,进化和组织对于解读基因调节至关重要.
- 增强剂的分歧是表型变化的重要因素.
- 未来的研究应该集中在监管环境中的复杂关系上.
相关概念视频
RNA Polymerase II Accessory Proteins
11.3K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
11.3K
Transcription Factors
83.4K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
83.4K
Transcription Factors
26.4K
26.4K
Eukaryotic Transcription Activators
13.1K
Transcription activators are proteins that promote the transcription of genes from DNA to RNA. In most cases, these proteins contain two separate domains ‒ a domain that binds to DNA and a domain for activating transcription; however, in some cases, a single domain is responsible for both binding and activation of transcription, as seen in the glucocorticoid receptor and MyoD.
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
The binding domains are capable of recognizing and interacting with regulatory sequences on the DNA. These...
13.1K
Bacterial Transcription
38.1K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
38.1K
Transcription
158.1K
Overview
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
158.1K


