循环寡核酸对DNA识别的结构效应
1Department of Chemistry, University of Rochester, Rochester, New York 14627.
Journal of the American Chemical Society
|November 22, 2016
概括
富含胺的圆形DNA寡合体通过形成三重螺旋体强烈地与富含氨酸的DNA/RNA结合. 一个循环中的五个核酸最好地跨越结合域,通过预组织增强亲和力.
科学领域:
- 核酸化学
- 结构生物学
- 生物物理化学
背景情况:
- 富含皮里米丁的圆形DNA寡合体与富含 purin的DNA/RNA形成双分子三环复合体.
- 结构变化影响这些核酸结合体的结合强度.
研究的目的:
- 研究结构修改对圆形DNA寡合物的结合亲和力的影响.
- 确定连接域的最佳循环大小.
- 评估循环与线性对结合的影响.
主要方法:
- 合成的圆形DNA寡合体具有不同的循环大小 (3-10nT) 和整体大小 (24-46nT).
- 使用化温度 (Tm) 研究来量化与沃森-克里克双重相比的结合亲和力.
- 对比共价封闭圆与线性""圆的结合亲和力.
主要成果:
- 确定了五个核酸的最佳循环大小,以实现强结合.
- 圆形寡合物比线性寡合物具有显著更高的结合亲和度 (17°~33°C高于Tm).
- 高结合亲和度归因于循环结构中预组织的利.
结论:
- 圆形DNA寡合体是富含 purin 的核酸的有效配体.
- 循环大小和圆形形状对于优化结合亲和度至关重要.
- 循环结构的预组织为结合提供了显著的优势.
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