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相关概念视频

lncRNA - Long Non-coding RNAs02:39

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In humans, more than 80% of the genome gets transcribed. However, only around 2% of the genome codes for proteins. The remaining part produces non-coding RNAs which includes ribosomal RNAs, transfer RNAs, telomerase RNAs, and regulatory RNAs, among other types. A large number of regulatory non-coding RNAs have been classified into two groups depending upon their length – small non-coding RNAs, such as microRNA, which are less than 200 nucleotides in length, and long non-coding RNA...
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Ribosome Profiling02:24

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Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
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Bacteria and archaea are susceptible to viral infections just like eukaryotes; therefore, they have developed a unique adaptive immune system to protect themselves. Clustered regularly interspaced short palindromic repeats and CRISPR-associated proteins (CRISPR-Cas) are present in more than 45% of known bacteria and 90% of known archaea.
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As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
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  1. 首页
  2. 基于crispri的基因组规模识别人类细胞中的功能性长非编码rna位点
  1. 首页
  2. 基于crispri的基因组规模识别人类细胞中的功能性长非编码rna位点

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Identification of Functionally-Relevant Lentivirus Integration Sites in an Insertional Mutagenesis Cell Library
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基于CRISPRi的基因组规模识别人类细胞中的功能性长非编码RNA位点

S John Liu1,2, Max A Horlbeck3,4,5,6, Seung Woo Cho7

  • 1Department of Neurological Surgery, University of California, San Francisco, CA 94143, USA.

Science (New York, N.Y.)
|December 17, 2016

在PubMed 上查看摘要

概括
此摘要是机器生成的。

研究人员使用CRISPR干扰选了数千种长非编码RNA (lncRNA). 他们发现许多 lncRNA 对于细胞生长至关重要, 它们的功能因细胞类型而异.

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科学领域:

  • 基因组学
  • 分子生物学
  • 细胞生物学

背景情况:

  • 人类基因组编码成千上万的长非编码RNAs (lncRNAs),它们是长达200多个核酸的转录,不产生蛋白质.
  • 虽然一些lncRNA在生物学和疾病中的作用已知,但大多数的功能仍然未被探索.
  • 了解 lncRNA 功能对于提高我们对细胞过程和疾病机制的了解至关重要.

研究的目的:

  • 系统地研究多种细胞类型中大量 lncRNA 的功能作用.
  • 确定细胞生长和增殖所必需的 lncRNA.
  • 确定 lncRNA 功能的细胞类型特异性.

主要方法:

  • 开发和应用CRISPR干扰 (CRISPRi) 平台以准16,401个lncRNA位点.
  • 在七个不同的细胞系中进行大规模的功能查,包括转化细胞和人类诱导的多能干细胞 (iPSC).
  • 分析 lncRNA 下降后的细胞生长和转录网络扰乱.

主要成果:

  • 鉴定499个 lncRNA位点,对细胞生长至关重要.
  • 发现89%的增长修饰 lncRNA 具有特定细胞类型的功能.
  • 证明 lncRNA 淘汰可以独特地影响不同细胞类型的转录网络.

结论:

  • 显著数量的 lncRNA 在细胞生长中发挥重要作用.
  • lncRNAs的功能重要性在很大程度上与细胞类型有关.
  • 这项研究为了解ncRNA功能及其在生物学和疾病中的上下文依赖作用提供了宝贵的资源.