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相关概念视频

Maxam-Gilbert Sequencing01:05

Maxam-Gilbert Sequencing

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In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
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DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
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Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
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相关实验视频

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Designing a Bio-responsive Robot from DNA Origami
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核酸反应路径的受约束多态序列设计

Brian R Wolfe1, Nicholas J Porubsky2, Joseph N Zadeh1

  • 1Division of Biology & Biological Engineering, California Institute of Technology , Pasadena, California 91125, United States.

Journal of the American Chemical Society
|February 14, 2017
PubMed
概括
此摘要是机器生成的。

这项研究介绍了设计核酸序列的计算框架,以控制它们的杂交反应. 该方法优化了特定反应路径的序列,使精确的分子编程和合成生物学应用成为可能.

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科学领域:

  • 生物技术
  • 计算生物学
  • 合成生物学

背景情况:

  • 设计复杂相互作用的核酸序列是一个挑战.
  • 控制特定的反应途径需要精确的序列工程.

研究的目的:

  • 为设计受控杂交和反应途径的核酸序列提供计算框架.
  • 为了实现分子编程和合成生物学系统的精确工程.

主要方法:

  • 将序列设计作为一个多状态优化问题.
  • 使用代表反应物,中间体和产品状态的目标试管.
  • 包含积极和消极的设计范式来控制路径内和路径外的反应.
  • 应用用户指定的约束,包括组成,互补性,模式预防和生物约束.

主要成果:

  • 开发了设计具有规定的反应路径的核酸序列的框架.
  • 证明了针对特定的二次结构和度进行设计的能力.
  • 启用了显式设计以防止不受欢迎的目标外互动.
  • 促进复杂应用的受约束多态序列设计.

结论:

  • 限制多态序列设计框架使核酸反应的精确工程成为可能.
  • 这种方法支持分子编程和合成生物学中的多种应用.
  • 通过NUPACK的网页应用程序,可以在线访问该设计工具.