氨酸激酶的迈凯利斯复合物以与催化率相匹配的频率取样过渡状态
Yu Peng, Alexandar L Hansen, Lei Bruschweiler-Li
1Department of Biochemistry and Molecular Biology, Oregon Health and Science University , Portland, Oregon 97239, United States.
Journal of the American Chemical Society
|March 14, 2017
概括
氨酸激酶 (AK) 动态揭示了迈凯利斯复杂模拟通道到过渡状态,决定了反应速率. 过渡状态模拟相互样本迈凯利斯和apo状态,澄清酶催化机制.
科学领域:
- 生物化学
- 酶动力学
- 结构动态
背景情况:
- 氨酸激酶 (AK) 是素激酶家族的一种成员.
- AK可以作为各种状态的酶催化模型.
- 关键状态包括apo,迈凯利斯复合模拟 (MCA),产品复合模拟 (PCA) 和过渡状态模拟 (TSA).
研究的目的:
- 研究AK中的酶催化物的结构和动态决定因素.
- 阐明AK在酶循环状态中的结构动态.
- 了解这些动力学如何影响阿尔金因酸化反应速率.
主要方法:
- 使用NMR放松分散测量.
- 监测了Ile,Leu和Val的甲基残留物.
- 在两个静态磁场进行测量.
主要成果:
- 所有研究的状态都表现出显著的μs-ms时间尺度动态.
- 只有MCA主要采样过渡状态的激发状态.
- 在MCA中,放松分散和平衡化学转移差异之间存在强烈的相关性.
- MCA的平均寿命为36毫秒,与TSA类形式的自由能量差异为8.5kJ/mol.
- 运输安全局相互采样MCA或apo状态.
结论:
- 在MCA的结构能量格局中,通道过渡到过渡状态,决定了速度限制的步骤.
- 过渡状态的自由能量仅略低于迈克利斯或阿波复合体的自由能量.
- 这些发现为酶催化的动态控制提供了洞察力.
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