通过Snf2核酶结构揭示的染色体重塑机制
Xiaoyu Liu1,2,3, Meijing Li1,2,3, Xian Xia1,2
1Ministry of Education Key Laboratory of Protein Science, Tsinghua University, Beijing 100084, China.
Nature
|April 21, 2017
概括
像SWI/SNF2这样的染色体重塑器使用ATP来改变DNA结构. 这项研究揭示了酵母SWI/SNF2与核细胞结合的冷EM结构,显示了它如何结合和变形DNA以进行调节.
科学领域:
- 分子生物学
- 结构生物学
- 生物化学
背景情况:
- 染色体重塑剂是依赖ATP的酶,通过改变核体结构来调节DNA的可访问性.
- 了解这些酶的机制对于解读基因调节和细胞过程至关重要.
研究的目的:
- 确定结合核体的酵母开关/非发酵糖 (SWI2/SNF2) 染色体重塑器的高分辨率结构.
- 阐明基因组结合和ATP驱动的染色体重塑的分子机制.
主要方法:
- 使用冷电子显微镜 (cryo-EM) 来获取结构数据.
- 用于研究酶核酶相互作用的生物化学测试.
主要成果:
- 在核酶结合时,冷-EM结构显示了Snf2核心域的重新调整,这表明了酶激活.
- 两个诱导的Brace螺旋环介导Snf2核心域之间的接触,这对于将ATP水解与重塑相合至关重要.
- Snf2通过其螺旋酶基因参与核细胞DNA酸脊柱,并与带电表面的第二个DNA旋转.
- 结合部位的Snf2对核细胞DNA的局部变形使基质进行重塑.
结论:
- 该结构为SWI2/SNF2重塑器如何结合和操纵核细胞提供了前所未有的机械洞察力.
- 这些发现突出了不同改造商的基板参与机制.
- 这项工作为了解依赖ATP的染色体重塑的结构基础奠定了基础.
相关概念视频
Nucleosome Remodeling
11.4K
Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
11.4K
Chromatin Modification in iPS Cells
2.2K
Chromatin modification alters gene expression; therefore, scientists can add histone-modifying enzymes, histone variants, and chromatin remodeling complexes to somatic cells to aid reprogramming into pluripotent stem (iPS) cells.
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
Compact chromatin makes reprogramming difficult. Enzymes, such as histone demethylases and acetyltransferases, are often added during reprogramming to loosen the chromatin, making the DNA more accessible to transcription factors. Molecules that inhibit histone...
2.2K
Duplication of Chromatin Structure
7.5K
The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
7.5K
Chromatin Packaging
22.6K
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
22.6K
Chromatin Packaging
19.9K
Each human somatic cell contains 6 billion base pairs of DNA. Each base pair is 0.34 nm long, meaning each diploid cell contains a staggering 2 meters of DNA. This long DNA strand is packed inside a nucleus measuring only 10-20 microns in diameter with the help of specialized DNA-binding proteins called histones. Together they form a compact DNA-protein complex called chromatin. The chromatin is further compacted into higher-order structures. The highest level of compaction is achieved during...
19.9K
Chromatin Packaging
10.1K
10.1K


