在Varkud卫星Ribozyme中进行基板螺旋重塑和裂隙循环激活的结构基础
Saurja DasGupta1, Nikolai B Suslov1, Joseph A Piccirilli1
1Department of Chemistry, and ‡Department of Biochemistry and Molecular Biology, The University of Chicago , Chicago, Illinois 60637, United States.
Journal of the American Chemical Society
|June 20, 2017
概括
瓦库德卫星中的 ribozyme
科学领域:
- 生物化学和分子生物学
- RNA催化
- 结构生物学
背景情况:
- 瓦库德卫星 (VS) рибо酶是一种催化性RNA分子,可进行特定位点的RNA分裂和结合.
- 基质识别和激活涉及通过接吻循环相互作用调节的关键"移动"形状.
- 了解这种机制是解读基于RNA的催化剂的关键.
研究的目的:
- 阐明Varkud卫星 ribozyme 中基质激活的结构基础.
- 为了可视化酶基质复合物的催化活性构造.
- 提供关于RNA折叠和催化效应的见解.
主要方法:
- 用3. 3 Å分辨率的X射线结晶学来确定VS ribozyme及其基质的结构.
- 与先前确定的核磁共振 (NMR) 结构的隔离基板进行比较.
主要成果:
- 晶体结构显示了活性状态中的完整的 ribozyme,基质处于关键的"移动"形状,与催化域结合.
- 该结构提供了从非活跃状态到活跃状态的基板重塑的详细物理描述.
- 三级相互作用与分裂循环的激活有关.
结论:
- 确定的结构提供了对VS ribozyme基质激活和重塑的机制理解.
- 这些发现强调了特定的三级相互作用对催化效率的重要性.
- 与毛针 ribozyme 的相似之处表明了增强 RNA 折叠忠实性和 ribozyme 活性的保守策略.
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