使用图形理论对超分子机器的甲基-NMR光谱进行自动分配
Iva Pritišanac1, Matteo T Degiacomi1, T Reid Alderson1
1Department of Chemistry, Physical & Theoretical Chemistry Laboratory, University of Oxford , South Parks Road, Oxford, Oxfordshire OX1 3QZ, U.K.
Journal of the American Chemical Society
|July 11, 2017
概括
甲基对使用NMR分析生物分子结构至关重要. 一种新的方法,即通过图匹配分配甲基 (MAGMA),可以自动分配甲基共振,准确度为100%,加速研究.
科学领域:
- 生物化学和结构生物学
- 核磁共振 (NMR) 光谱学
- 计算生物学
背景情况:
- 甲基对通过NMR研究超分子组结构,动力学和功能有价值.
- 将甲基共振分配到特定的生物分子位置是一个重大挑战,限制了方法的应用.
研究的目的:
- 在NMR光谱学中开发甲基共振分配的自动化方法.
- 克服在生物分子内分配光谱共振的现有局限性.
主要方法:
- 通过图匹配 (MAGMA) 引入甲基分配,这是一个自动化的协议.
- 使用图形匹配来探索每个共振的分配可能性.
- 与合成数据的验证以及9个交叉验证的溶液和固态NMR示例.
主要成果:
- 在安全的甲基共振分配中,MAGMA可以达到100%的准确性.
- 证明能够区分不同的蛋白质结构.
- 在HSP90的药物发现研究中有效区分了连接体结合模式.
结论:
- MAGMA为甲基共振分配提供了一个精确而强大的解决方案.
- 这种方法显著加速了使用甲基NMR的超分子机器的研究.
- 能够更快地发现药物和进行结构生物学研究.
相关概念视频
¹H NMR: Interpreting Distorted and Overlapping Signals
1.6K
Spin systems where the difference in chemical shifts of the coupled nuclei is greater than ten times J are called first-order spin systems. These nuclei are weakly coupled, and their chemical shifts and coupling constant can generally be estimated from the well-separated signals in the spectrum.
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are...
As Δν decreases and the signals move closer, the doublets appear increasingly distorted. The intensities of the inner lines increase at the cost of those of the outer lines as the signals are...
1.6K
¹H NMR: Complex Splitting
2.0K
A proton M that is coupled to a proton X results in doublet signals for M. However, NMR-active nuclei can be simultaneously coupled to more than one nonequivalent nucleus. When M is coupled to a second proton A, such as in styrene oxide, each peak in the doublet is split into another doublet.
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied...
Splitting diagrams or splitting tree diagrams are routinely used to depict such complex couplings. While drawing splitting diagrams, the splitting with the larger coupling constant is usually applied...
2.0K
Interpreting ¹H NMR Signal Splitting: The (n + 1) Rule
2.8K
In the AX proton spin system, proton A can sense the two spin states of a coupled proton X, resulting in a doublet NMR signal with two peaks of equal (1:1) intensity. When proton A is coupled to two equivalent protons (AX2 spin system), the spin states of each X can be aligned with or against the external field, creating three possible scenarios. This results in a 1:2:1 triplet signal, where the central peak corresponds to the chemical shift of A and is twice as large or intense as the...
2.8K
2D NMR: Homonuclear Correlation Spectroscopy (COSY)
2.0K
Homonuclear correlation spectroscopy, or COSY, is a 2-dimensional NMR technique that provides information about coupled protons. Typically, the geminal and vicinal coupling are observed. For example, consider the COSY spectrum of ethyl acetate, where its 1D proton NMR spectrum is plotted along the vertical and horizontal axes with their corresponding chemical shift scale. Three spots on the diagonal corresponding to the three peaks in the 1D proton spectrum are called diagonal peaks. The COSY...
2.0K
¹H NMR Signal Integration: Overview
3.7K
The intensity of a signal, which can be represented by the area under the peak, depends on the number of protons contributing to that signal. The area under each peak is shown as a vertical line called an integral, with the integral value listed under it, as seen in the proton NMR spectrum of benzyl acetate. Each integral value is divided by the smallest integral value to obtain the ratio of the number of protons producing each signal. The ratio reveals the relative number of protons and not...
3.7K
2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)
1.5K
Heteronuclear single-quantum correlation spectroscopy (HSQC) is a 2D NMR technique that reveals one-bond correlations between hydrogen and a heteronucleus. The HSQC experiment is similar to the heteronuclear correlation experiment (HETCOR) but is more sensitive. In the HSQC spectrum, the proton chemical shift is plotted on the horizontal F2 axis, while the 13C chemical shift is plotted on the vertical F1 axis. The corresponding proton and 13C spectra are also shown. The HSQC contour plot does...
1.5K


