核糖体是优化自催化生产的
Shlomi Reuveni1, Måns Ehrenberg2, Johan Paulsson1
1Department of Systems Biology, HMS, Harvard University, 200 Longwood Avenue, Boston, Massachusetts 02115, USA.
Nature
|July 21, 2017
概括
这项研究在数学上展示了大规模的核糖体特征,如主导核糖体RNA和众多小蛋白质,如何加速自身的产生. 这些结构特征优化了核糖体
科学领域:
- 分子生物学
- 生物物理
- 生物化学
背景情况:
- 核糖体是负责蛋白质合成的复杂分子机器.
- 在功能,错误纠正,速度和控制方面,人们很好地了解了核糖体的微小特征.
- 核糖体的更大规模结构特征仍然不太了解.
研究的目的:
- 在数学上解释大规模核糖体特征的功能意义.
- 调查核糖体RNA (rRNA) 的主导性和许多小核糖体蛋白质 (rPs) 如何促进核糖体的产生.
- 证明这些特征增强了核糖体的自催化生成.
主要方法:
- 核糖体结构和生产的数学建模.
- 对rRNA质量主导和rP细分之间的关系进行分析.
- 在核糖体内模拟自身催化过程.
主要成果:
- 证明了少数主要的核糖体RNA分子构成了大部分核糖体质量.
- 显示了核糖体蛋白质分裂成55-80个小,大小相似的部分是关键特征.
- 数学证明这些大规模的特征显著加快了核糖体的自催化生成.
结论:
- 较少了解的,较大规模的核糖体特征不是随意的,而是为了高效的自我生产而优化.
- 对于加速核糖体自身催化循环,rRNA的优势和RP的细分至关重要.
- 这为核糖体结构提供了新的功能视角,直接将结构与生产效率联系起来.
相关概念视频
Ribosomes
11.3K
Ribosomes translate genetic information encoded by messenger RNA (mRNA) into proteins. Both prokaryotic and eukaryotic cells have ribosomes. Cells that synthesize large quantities of protein—such as secretory cells in the human pancreas—can contain millions of ribosomes.
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
11.3K
Ribosomes
78.6K
Ribosomes translate genetic information encoded by messenger RNA (mRNA) into proteins. Both prokaryotic and eukaryotic cells have ribosomes. Cells that synthesize large quantities of protein—such as secretory cells in the human pancreas—can contain millions of ribosomes.
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
Ribosome Structure and Assembly
Ribosomes are composed of ribosomal RNA (rRNA) and proteins. In eukaryotes, rRNA is transcribed from genes in the nucleolus—a part of the nucleus that specializes in ribosome...
78.6K
Ribosomal RNA Synthesis
15.0K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
15.0K
Ribosomal RNA Synthesis
4.6K
4.6K
Improving Translational Accuracy
15.3K
Base complementarity between the three base pairs of mRNA codon and the tRNA anticodon is not a failsafe mechanism. Inaccuracies can range from a single mismatch to no correct base pairing at all. The free energy difference between the correct and nearly correct base pairs can be as small as 3 kcal/ mol. With complementarity being the only proofreading step, the estimated error frequency would be one wrong amino acid in every 100 amino acids incorporated. However, error frequencies observed in...
15.3K
Ribosome Profiling
4.2K
Ribosome profiling or ribo-sequencing is a deep sequencing technique that produces a snapshot of active translation in a cell. It selectively sequences the mRNAs protected by ribosomes to get an insight into a cell’s translation landscape at any given point in time.
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
Applications of ribosome profiling
Ribosome profiling has many applications, including in vivo monitoring of translation inside a particular organ or tissue type and quantifying new protein synthesis levels.
The technique...
4.2K


