使用NMR放松分散来定义大肠杆菌二叶酸还原酶的产物释放的结构基础
David Oyen1, R Bryn Fenwick1, Phillip C Aoto1
1Department of Integrative Structural and Computational Biology and Skaggs Institute for Chemical Biology, The Scripps Research Institute , 10550 North Torrey Pines Road, La Jolla, California 92037, United States.
Journal of the American Chemical Society
|July 25, 2017
概括
当辅因子NADPH结合时,酶二叶酸减少酶会更快地释放其产物四叶酸 (THF). 这是因为NADPH
科学领域:
- 酵素学
- 结构生物学
- 生物化学
背景情况:
- 从大肠杆菌二酸减少酶中释放四酸盐 (THF) 是其催化循环中的速度限制步骤.
- 产品的释放可以通过内在途径 (NADPH缺失) 或异质途径 (NADPH结合) 发生,后者显著增加分离率.
- 在过渡激发状态下,精确的酶结构和THF构造仍未被描述.
研究的目的:
- 阐明二酸减少酶中全产物释放的结构基础.
- 在NADPH结合激发状态下研究酶结构和THF构造.
主要方法:
- 侧链质子NMR放松分散测量
- 进行X射线结晶学.
- 基于结构的化学转移预测.
主要成果:
- 在激发状态下,NADPH辅因子的尼古丁胺环暂时进入活性部位,取代THF环.
- THF的p-aminobenzoyl-l-glutamate尾部在扩大的活性位点裂中保持松散的结合.
- 这种由NADPH进行的重塑创造了一个人口稀少,高能量的状态,促进THF的快速释放.
结论:
- NADPH辅因子积极重塑二酸减少酶活性部位和THF构成.
- 尼古丁胺环进入活性部位是形成激发状态以快速释放全产品的关键.
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