脂肪和NADPH的乳标记的化学基础
Zhaoyue Zhang1,2, Li Chen1,2, Ling Liu1,2
1Lewis-Sigler Institute for Integrative Genomics, Princeton University , Princeton, New Jersey 08544, United States.
Journal of the American Chemical Society
|September 16, 2017
概括
在新陈代谢研究中,的追踪因水和NADPH之间的酶催化H-D交换而复杂化. 纠正这种交换对于准确跟踪氧化还原反应和使用化水的脂肪酸合成至关重要.
科学领域:
- 代谢工程是代谢工程.
- 生物化学 生物化学
- 系统生物学 系统生物学
背景情况:
- 像13C和这样的同位素标记物对于研究细胞代谢至关重要.
- 追踪提供了对氧化还原反应的洞察力,但在准确量化NADPH生产方面面临着挑战.
- 在代谢研究中,NADPH中原子的命运尚未完全理解.
研究的目的:
- 在追踪研究中调查NADPH中未计数的的来源.
- 阐明水和NADPH之间酶催化H-D交换的作用.
- 为了澄清从D2O转化为脂肪酸的子子的途径,并使精确的代谢流量分析成为可能.
主要方法:
- 使用Flavin酶研究了水和NADPH之间的酶催化H-D交换.
- 在细胞系统中分析了NADPH的产生和的结合.
- 在D2O的存在下合成的脂肪酸中的量化化.
主要成果:
- 确定了水和NADPH之间的酶催化H-D交换作为缺少的来源.
- 证明孤立的NADPH不会与水交换H-D,但Flavin酶可催化细胞中的快速交换.
- 确定D2O主要通过NADPH标记脂肪酸,从而可以无参数计算质量同位素分布.
结论:
- 必须考虑水和NADPH之间的酶催化H-D交换,以准确评估NADPH的生物来源.
- 了解这种交换机制对于精确解释对氧化还原因子和脂肪酸代谢中的追踪研究至关重要.
- 这种知识允许从D2O标记实验中准确,无模型计算脂肪酸质量同位素分布.
相关概念视频
¹H NMR of Labile Protons: Deuterium (²H) Substitution
1.4K
This lesson illustrates the role of deuterium substitution in simplifying the NMR spectrum of compounds comprising labile protons. One method employed is the use of deuterium. Amongst the three isotopes of hydrogen, deuterium (2H) has a nucleus composed of one proton and one neutron. When the D2O solvent is added to a pure dry ethanol solution, its labile proton is substituted with deuterium.
1.4K
¹³C NMR: Distortionless Enhancement by Polarization Transfer (DEPT)
1.8K
When proton-coupled carbon-13 spectra are simplified by a broadband proton decoupling technique, structural information about the coupled protons is lost. Distortionless enhancement by polarization transfer (DEPT) is a technique that provides information on the number of hydrogens attached to each carbon in a molecule. While the DEPT experiment utilizes complex pulse sequences, the pulse delay and flip angle are specifically manipulated. The resulting signals have different phases depending on...
1.8K
¹³C NMR: ¹H–¹³C Decoupling
1.9K
The probability of having two carbon-13 atoms next to each other is negligible because of the low natural abundance of carbon-13. Consequently, peak splitting due to carbon-carbon spin-spin coupling is not observed in spectra. However, protons up to three sigma bonds away split the carbon signal according to the n+1 rule, resulting in complicated spectra.
A broadband decoupling technique is used to simplify these complex, sometimes overlapping, signals. Broadband decoupling relies on a...
A broadband decoupling technique is used to simplify these complex, sometimes overlapping, signals. Broadband decoupling relies on a...
1.9K
Labeling DNA Probes
9.5K
DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
Radioisotopes, fluorophores, or small molecule binding partners like biotin or digoxigenin, are the most widely used reporter tags for labeling DNA probes. These labels can be attached to the probe DNA molecule via...
9.5K
Chemical Shift: Internal References and Solvent Effects
1.4K
In an NMR sample, precise measurement of the absolute absorption frequencies of nuclei is difficult. A standard internal reference compound is added, and the frequency difference between the reference signal and sample signals is measured.
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
1.4K
NMR Spectroscopy and Mass Spectrometry of Aldehydes and Ketones
5.7K
In aldehydes, the hydrogen atom connected to the carbonyl carbon helps distinguish aldehydes from other carbonyl compounds using ¹H NMR spectroscopy. The closeness of aldehydic hydrogen to the electrophilic carbonyl carbon highly deshields the hydrogen atom causing its signal to appear around 10 ppm in the ¹H NMR spectra. α hydrogens split the aldehydic proton signal, which helps identify the number of α hydrogens in the molecule. For instance, one α hydrogen creates a...
5.7K


