人类基因组中普遍存在的序列可以在生理pH下形成微型结构
Bartomeu Mir1,2, Israel Serrano3, Diana Buitrago4
1Inorganic and Organic Chemistry Department, Organic Chemistry Section, and IBUB, University of Barcelona , Martí i Franquès 1-11, 08028 Barcelona, Spain.
Journal of the American Chemical Society
|September 22, 2017
概括
在生理pH下,重复的DNA序列形成i-motif-like四重复结构,由独特的基对稳定. 这些结构在人类基因组中很常见,并且在与发育相关的基因中发现.
科学领域:
- 生物化学
- 结构生物学
- 基因组学
背景情况:
- 复制性DNA序列越来越多地被认为超出了简单的结构元素.
- 了解DNA的高阶结构对于解读基因调节和功能至关重要.
- 特定的重复序列可以采用非正规的DNA结构.
研究的目的:
- 确定d ((TCGTTCCGT) 和相关的重复DNA序列的溶液结构.
- 在生理pH下研究DNA四重复形成的结构基础.
- 探索这些序列在人类基因组中的流行和潜在功能.
主要方法:
- 核磁共振 (NMR) 光谱法用于溶液结构的确定.
- 生物信息学分析用于识别人类基因组中的序列流行.
- 根据pH值进行结构研究以鉴定稳定性.
主要成果:
- 一些重复的DNA序列在生理pH下折叠成i-motif的四重复.
- 四重体结构由半质子C:C+基对和小槽四边形 (G:C或G:T) 稳定.
- 这些结构具有高稳定性,有效pH过渡值 (pHT) 超过7.5,更长的序列形成了合"珠"结构.
结论:
- 在d(TCGTTCCGT) 重复和相关的序列形成稳定,i-motif-like四重复结构.
- 这些四重复被基配对和基相互作用的独特组合稳定.
- 这些序列在人类基因组中的流行,特别是在与发育相关的基因中,表明它们具有重要的生物学作用.
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