罕见变异对不同组织的基因表达的影响
Xin Li1, Yungil Kim2, Emily K Tsang1,3
1Department of Pathology, Stanford University, Stanford, California 94305, USA.
Nature
|October 13, 2017
概括
罕见的基因变异对人类组织的基因表达有显著影响. 一种名为RIVER的新方法有助于识别这些变异及其调节效应, 提高我们对疾病风险的了解.
科学领域:
- 遗传学和基因组学
- 分子生物学
- 生物信息学
背景情况:
- 罕见的基因变异在人类中很常见,有助于疾病的易感性.
- 鉴定罕见变异的表型影响,特别是非编码变异,仍然是一个挑战.
- 之前的研究将罕见的非编码变体与单个组织中的极端基因表达联系起来.
研究的目的:
- 研究罕见变异对多种人体组织基因表达的影响.
- 开发一种用于预测罕见变异的调节效应的新计算方法.
主要方法:
- 从基因型-组织表达 (GTEx) 项目分析了全基因组和多组织RNA测序数据.
- 在44个人类组织中确定了基因表达异常值.
- 开发并应用RIVER (RNA-informed变异对调节的影响),这是一个整合表达数据的贝叶斯模型.
主要成果:
- 显著比例的基因表达异常值 (58%的低表达,28%的过度表达) 与附近保存的罕见变异相关.
- 与仅使用基因组注释的模型相比,RIVER在预测罕见变异的调节效果方面表现出更高的准确性.
- 发现罕见变异会导致各种组织的基因表达发生重大变化.
结论:
- 罕见的基因变异在人类组织中发挥着重要的基因表达变异性.
- 开发的RIVER模型提供了一种有效的方法来解释罕见变异的功能影响.
- 这项工作为了解罕见变异对个体健康和疾病的贡献提供了基础.
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