非酶性RNA原始扩展的区域选择性的机制解释
Constantin Giurgiu1, Li Li1, Derek K O'Flaherty1
1Howard Hughes Medical Institute, Department of Molecular Biology, and Center for Computational and Integrative Biology, Massachusetts General Hospital , Boston, Massachusetts 02114, United States.
Journal of the American Chemical Society
|November 8, 2017
概括
研究人员确定了选择性RNA原始扩展的关键因素, 具有特定基配对的快速高产反应有利于所需的3-5链接,从而推进了前生物化学模型.
科学领域:
- 生命研究的起源
- 前生物化学
- 核糖核酸生物化学
背景情况:
- 非酶性RNA原料扩展对于理解从前生物化学到生物学的过渡至关重要.
- 现有的实验模型产生了2'-5'和3'-5'核内链的混合物,阻碍了选择性RNA的形成.
研究的目的:
- 研究非酶性RNA原始延伸中控制区域选择性的因素.
- 确定有利于形成3'-5'核联的条件.
主要方法:
- 离开组,核基和模板序列的系统变化.
- 对反应速率和区域选择性的分析.
- 在延伸过程中对基相互作用的研究.
主要成果:
- 快速和高产反应选择性地产生了3'-5'核内链.
- 高3'-5'区域选择性与延伸和相邻下游位置的沃森-克里克基配对相关.
- 与最佳基因配对的偏差降低了反应速度和区域选择性.
结论:
- 特定的反应条件,特别是高效的催化和精确的基因配对,对于实现选择性3'-5'RNA链接形成至关重要.
- 了解这些因素为早期生命场景中的RNA原始扩展提供了一个工作模型.
相关概念视频
RACE - Rapid Amplification of cDNA Ends
7.3K
Rapid Amplification of cDNA Ends, or RACE, is one of the most effective methods to obtain a full-length cDNA from an mRNA sequence between a known internal region to the unknown sequence at the 5’ or 3’ end. The unknown region is cloned in the cDNA by a gene-specific primer that binds the known end, and a hybrid primer that attaches a predefined anchor sequence to the unknown end of the cDNA. The sequence in between is amplified by PCR with an anchor primer and a gene-specific...
7.3K
Regioselectivity of Electrophilic Additions to Alkenes: Markovnikov's Rule
17.5K
If a set of reactants can yield multiple constitutional isomers, but one of the isomers is obtained as the major product, the reaction is said to be regioselective. In such reactions, bond formation or breaking is favored at one reaction site over others.
The hydrohalogenation of an unsymmetrical alkene can yield two haloalkane products, depending on which vinylic carbon takes up the halogen. However, one product usually predominates, where hydrogen adds to the vinylic carbon bearing the...
The hydrohalogenation of an unsymmetrical alkene can yield two haloalkane products, depending on which vinylic carbon takes up the halogen. However, one product usually predominates, where hydrogen adds to the vinylic carbon bearing the...
17.5K
Ribozymes
13.5K
The term ribozyme is used for RNA that can act as an enzyme. Ribozymes are mainly found in selected viruses, bacteria, plant organelles, and lower eukaryotes. Ribozymes were first discovered in 1982 when Tom Cech’s laboratory observed Group I introns acting as enzymes. This was shortly followed by the discovery of another ribozyme, Ribonulcease P, by Sid Altman’s laboratory. Both Cech and Altman received the Nobel Prize in chemistry in 1989 for their work on ribozymes.
Ribozymes can...
Ribozymes can...
13.5K
Bacterial RNA Polymerase
33.0K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
33.0K
Proofreading
9.2K
Synthesis of new DNA molecules is carried out by the enzyme DNA polymerase, which adds nucleotides on the daughter strand complementary to the template DNA strand. DNA polymerase has a higher affinity to add the correct base and ensures fidelity during DNA replication. Furthermore, it exhibits proofreading activity during replication, using an exonuclease domain that cuts off incorrect nucleotides from the nascent DNA strand.
Errors During Replication are Corrected by the DNA Polymerase...
Errors During Replication are Corrected by the DNA Polymerase...
9.2K
Transcription Initiation
21.4K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
21.4K


