在细胞染色体P450cam (CYP101A1) 中依赖基质的体调节
Alec H Follmer1, Mavish Mahomed2, David B Goodin2
1Departments of Molecular Biology and Biochemistry, Pharmaceutical Sciences, and Chemistry , University of California , Irvine , California 92697-3900 , United States.
Journal of the American Chemical Society
|October 31, 2018
概括
细胞染色体P450cam具有第二个基质位点. 将第二个基质分子结合到这个异质位点,打开了基质进入和产品退出的通道,揭示了合作性.
科学领域:
- 生物化学
- 分子生物学
- 酵素学
背景情况:
- 细胞染色体P450cam是一种经过充分研究的酶.
- 证据表明第二个基质结合点,但其作用尚不清楚.
- 通过活跃站点道了解基板/产品运输至关重要.
研究的目的:
- 调查细胞染色体P450cam中的第二基质结合点的位置和生物相关性.
- 阐明基质结合和产品退出的机制.
- 探索不同绑定站点之间的潜在合作.
主要方法:
- 使用了分子动力学模拟.
- 基质和产品结合和退出路径的分析.
- 对通道动态和位相互作用的研究.
主要成果:
- 鉴定出一个偏远的异质部位,影响基质结合和产品脱离.
- 将第二个基质分子结合到异质部位将打开通道1.
- 一个新的出口通道 (通道2) 被预备,以促进基板的进入和产品的出口.
- 在活性部位和基部位之间证明了合作性.
结论:
- 这项研究揭示了异质部位与P450cam活性部位之间的动态相互作用.
- 这种相互作用通过调节基质获取和产品释放来控制酶活性.
- 这些发现与之前关于P450cam功能的实验观察相一致.
相关概念视频
Allosteric Regulation
63.3K
Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
63.3K
Cooperative Allosteric Transitions
8.7K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
8.7K
Cooperative Allosteric Transitions
2.7K
2.7K
Cooperative Allosteric Transitions
3.1K
3.1K
Regulated Protein Degradation
8.9K
It is vital to regulate the activity of enzymatic as well as non-enzymatic proteins inside the cell. This can be achieved either through creating a balance between their rate of synthesis and degradation or regulating the intrinsic activity of the protein. Both these regulation mechanisms play an essential role in the normal functioning of cells.
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
Protein degradation plays two important roles in the cells. It helps to protect cells from misfolded or damaged proteins before they lead to a...
8.9K
Allosteric Proteins-ATCase
6.6K
Binding sites linkages can regulate a protein's function. For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
6.6K


